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BaseInfo

ncRNA ID	novel_zma_miR14265
Species	Zea mays
Class	miRNA
Genome position	Chr9:158093874-158094035 [+]
Reference genome	RefGen_v4
Source	SRR2089700
Length	24
Mature sequence(if miRNA)	1 - AAAGUUUAGUCCGGGUCACAUUAA - 24
Stem-loop(if miRNA)	--             G   A    A  C      -   UUAAAUA  A    GAAAUA   A  -CAACCAACU    U   U   AAAGUUUAGUCCG GUC CAUU AA GUUUGA CUU       GG GUAU      UAG CC          GGAC AGA U   ||||||||||||| ||| |||| || |||||| |||       || ||||      ||| ||          |||| |||   UUUUAAAUCGGGU CAG GUAA UU CAAACU GGA       CC CAUA      GUC GG          UCUG UCU C GA             A   A    C  A      U   UGCAAGG  -    AUUACA   -  CUUCUAAUUU    C   G
Stem-loop sequence	AAAGUUUAGUCCGGGUCACAUUAAACGUUUGACUUUUAAAUAGGAGUAUGAAAUAUAGACCCAACCAACUGGACUAGAUUCGUCUCGUCUUUUAAUCUUCGGCUGACAUUAAUACCCGGAACGUAGGUUCAAACAUUCAAUGAGACAUGGGCUAAAUUUUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001152444.1	ncRNA:24   AAUUACACUGGGCCUGAUUUGAAA   1   ||=||||||||||||||||||||| targets:993   UUGAUGUGACCCGGACUAAACUUU   1016 Target Full Sequence	0.0	Zea mays uncharacterized LOC100279435 (LOC100279435), mRNA	NA	coding protein	psRNATarget
BT054237.2	ncRNA:24   AAUUACACUGGGCCUGAUUUGAAA   1   ||=||||||||||||||||||||| targets:993   UUGAUGUGACCCGGACUAAACUUU   1016 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0189C11 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020544947.1	ncRNA:24   AAUUACACUGGGCCUGAUUUGAAA   1   ||=||||||||||||||||||||| targets:2899   UUGAUGUGACCCGGACUAAACUUU   2922 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100273701 (LOC100273701), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ056664.1	ncRNA:24   AAUUACACUGGGCCUGAUUUGAAA   1   ||=|||||||||||=||||||||| targets:99   UUGAUGUGACCCGGGCUAAACUUU   122 Target Full Sequence	1.5	TSA: Zea mays contig57786, mRNA sequence	NA	coding protein	psRNATarget
JB163851.1	ncRNA:24   AAUUACACUGGGCCUGAUUUGAAA   1   ||=|||||||||||=||||||||| targets:162   UUGAUGUGACCCGGGCUAAACUUU   185 Target Full Sequence	1.5	Sequence 1515 from Patent EP2559767	NA	coding protein	psRNATarget
JB163849.1	ncRNA:24   AAUUACACUGGGCCUGAUUUGAAA   1   ||=|||||||||||=||||||||| targets:162   UUGAUGUGACCCGGGCUAAACUUU   185 Target Full Sequence	1.5	Sequence 1513 from Patent EP2559767	NA	coding protein	psRNATarget
HI403388.1	ncRNA:24   AAUUACACUGGGCCUGAUUUGAAA   1   ||=|||||||||||=||||||||| targets:162   UUGAUGUGACCCGGGCUAAACUUU   185 Target Full Sequence	1.5	Sequence 1513 from Patent EP2074227	NA	coding protein	psRNATarget
JB163793.1	ncRNA:24   AAUUACACUGGGCCUGAUUUGAAA   1   ||=|||||||||||=||||||||| targets:162   UUGAUGUGACCCGGGCUAAACUUU   185 Target Full Sequence	1.5	Sequence 1457 from Patent EP2559767	NA	coding protein	psRNATarget
HI403390.1	ncRNA:24   AAUUACACUGGGCCUGAUUUGAAA   1   ||=|||||||||||=||||||||| targets:162   UUGAUGUGACCCGGGCUAAACUUU   185 Target Full Sequence	1.5	Sequence 1515 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235462.1	ncRNA:24   AAUUACACUGGGCCUGAUUUGAAA   1   ||=|||||||||||=||||||||| targets:162   UUGAUGUGACCCGGGCUAAACUUU   185 Target Full Sequence	1.5	Sequence 1457 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235518.1	ncRNA:24   AAUUACACUGGGCCUGAUUUGAAA   1   ||=|||||||||||=||||||||| targets:162   UUGAUGUGACCCGGGCUAAACUUU   185 Target Full Sequence	1.5	Sequence 1513 from Patent EP2985353	NA	coding protein	psRNATarget
HI403332.1	ncRNA:24   AAUUACACUGGGCCUGAUUUGAAA   1   ||=|||||||||||=||||||||| targets:162   UUGAUGUGACCCGGGCUAAACUUU   185 Target Full Sequence	1.5	Sequence 1457 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235520.1	ncRNA:24   AAUUACACUGGGCCUGAUUUGAAA   1   ||=|||||||||||=||||||||| targets:162   UUGAUGUGACCCGGGCUAAACUUU   185 Target Full Sequence	1.5	Sequence 1515 from Patent EP2985353	NA	coding protein	psRNATarget
EU949360.1	ncRNA:24   AAUUACACUGGGCCUGAUUUGAAA   1   ||=|||||||||||=||||||||| targets:820   UUGAUGUGACCCGGGCUAAACUUU   843 Target Full Sequence	1.5	Zea mays clone 403134 mRNA sequence	NA	coding protein	psRNATarget
XM_008656975.2	ncRNA:24   AAUUACACUGGGCCUGAUUUGAAA   1   ||=|||||||||||=||||||||| targets:814   UUGAUGUGACCCGGGCUAAACUUU   837 Target Full Sequence	1.5	PREDICTED: Zea mays putative disease resistance RPP13-like protein 1 (LOC103634594), mRNA	NA	coding protein	psRNATarget
EZ073045.1	ncRNA:24   AA-UUACACUGGGCCUGAUUUGAAA   1   ||-=|||||||**|||||||||||| targets:13   UUCGAUGUGACAGGGACUAAACUUU   37 Target Full Sequence	2.5	TSA: Zea mays contig08682, mRNA sequence	NA	coding protein	psRNATarget