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BaseInfo

ncRNA ID novel_zma_miR14238
Species Zea mays
Class miRNA
Genome position Chr7:106548152-106548272 [-]
Reference genome RefGen_v4
Source SRR2089700;SRR2089702;SRR2089703
Length 24
Mature sequence(if miRNA) 1 - AAGGAAUAAAAUGAAGAGACUAAA - 24
Stem-loop(if miRNA) --     C  AG          A    A  UCCA    UA                   C
  UAGUC CU  AUUUUAUUCC UUUU GU    AAAU  CUAAAUAUAGAAACUAAAA U
  ||||| ||  |||||||||| |||| ||    ||||  ||||||||||||||||||| U
  AUCAG GA  UAAAAUAAGG AAAA CA    UUUA  GAUUUAUAUCUUUGAUUUU U
AA     A  AG          A    A  UAUA    GC                   A
Stem-loop sequence UAGUCCCUAGAUUUUAUUCCAUUUUAGUUCCAAAAUUACUAAAUAUAGAAACUAAAACUUUAUUUUAGUUUCUAUAUUUAGCGAUUUAUAUACAAAAAAGGAAUAAAAUGAAGAGACUAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008656457.2
ncRNA:24   AAAUCAGAGAAGUAAAAUAAGGAA   1
  |||||||*||||||||||||||||
targets:1669   UUUAGUCCCUUCAUUUUAUUCCUU   1692

1.0 PREDICTED: Zea mays programmed cell death protein 2 (LOC103634523), transcript variant X5, mRNA NA coding protein psRNATarget
EU956227.1
ncRNA:24   AAAUCAGAGAAGUAAAAUAAGGAA   1
  |||||||*||||||||||||||||
targets:1266   UUUAGUCCCUUCAUUUUAUUCCUU   1289

1.0 Zea mays clone 1559264 mRNA sequence NA coding protein psRNATarget
XM_008650754.2
ncRNA:24   AAAUCAGAGAAGUAAAAUAAGGAA   1
  |||||||*||||||||||||||||
targets:1179   UUUAGUCCCUUCAUUUUAUUCCUU   1202

1.0 PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008650753.2
ncRNA:24   AAAUCAGAGAAGUAAAAUAAGGAA   1
  |||||||*||||||||||||||||
targets:1173   UUUAGUCCCUUCAUUUUAUUCCUU   1196

1.0 PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008650758.2
ncRNA:24   AAAUCAGAGAAGUAAAAUAAGGAA   1
  |||||||*||||||||||||||||
targets:1170   UUUAGUCCCUUCAUUUUAUUCCUU   1193

1.0 PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008650759.2
ncRNA:24   AAAUCAGAGAAGUAAAAUAAGGAA   1
  |||||||*||||||||||||||||
targets:1161   UUUAGUCCCUUCAUUUUAUUCCUU   1184

1.0 PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X4, mRNA NA coding protein psRNATarget
EU942443.1
ncRNA:24   AAAUCAGAGAAGUAAAAUAAGGAA   1
  |||||||*||||||||||||||||
targets:489   UUUAGUCCCUUCAUUUUAUUCCUU   512

1.0 Zea mays clone 1501876 mRNA sequence NA coding protein psRNATarget
LQ239351.1
ncRNA:24   AAAUCAGAGAAGUAAAAUAAGGAA   1
  |||||||*||||||||||||||||
targets:6   UUUAGUCCCUUCAUUUUAUUCCUU   29

1.0 Sequence 5346 from Patent EP2985353 NA coding protein psRNATarget
JB167682.1
ncRNA:24   AAAUCAGAGAAGUAAAAUAAGGAA   1
  |||||||*||||||||||||||||
targets:6   UUUAGUCCCUUCAUUUUAUUCCUU   29

1.0 Sequence 5346 from Patent EP2559767 NA coding protein psRNATarget
HI407221.1
ncRNA:24   AAAUCAGAGAAGUAAAAUAAGGAA   1
  |||||||*||||||||||||||||
targets:6   UUUAGUCCCUUCAUUUUAUUCCUU   29

1.0 Sequence 5346 from Patent EP2074227 NA coding protein psRNATarget
XM_020543841.1
ncRNA:24   AAAUCAGAGAAGUAAAAUAAGGAA   1
  |||||||*|||||||||||||=||
targets:944   UUUAGUCCCUUCAUUUUAUUCUUU   967

2.5 PREDICTED: Zea mays lo1 pI allergen homolog 1 (lop1), transcript variant X1, mRNA NA coding protein psRNATarget
BT083492.2
ncRNA:24   AAAUCAGAGAAGUAAAAUAAGGAA   1
  |||||||*||||||||*|||||||
targets:673   UUUAGUCCCUUCAUUUCAUUCCUU   696

2.5 Zea mays full-length cDNA clone ZM_BFb0003B18 mRNA, complete cds NA coding protein psRNATarget
EU965238.1
ncRNA:24   AAAUCAGAGAAGUAAAAUAAGGAA   1
  |||||||*|||||||||||||*||
targets:1188   UUUAGUCCCUUCAUUUUAUUCAUU   1211

2.5 Zea mays clone 284715 protein COQ10 A mRNA, complete cds NA coding protein psRNATarget
NM_001156492.1
ncRNA:24   AAAUCAGAGAAGUAAAAUAAGGAA   1
  |||||||*|||||||||||||*||
targets:1188   UUUAGUCCCUUCAUUUUAUUCAUU   1211

2.5 Zea mays protein COQ10 A (LOC100283591), mRNA NA coding protein psRNATarget
HI403044.1
ncRNA:24   AAAUCAGAGAAGUAAAAUAAGGAA   1
  |||||||*|||||||||||*||||
targets:26   UUUAGUCCCUUCAUUUUAUACCUU   49

2.5 Sequence 1169 from Patent EP2074227 NA coding protein psRNATarget
LQ235174.1
ncRNA:24   AAAUCAGAGAAGUAAAAUAAGGAA   1
  |||||||*|||||||||||*||||
targets:26   UUUAGUCCCUUCAUUUUAUACCUU   49

2.5 Sequence 1169 from Patent EP2985353 NA coding protein psRNATarget
JB163505.1
ncRNA:24   AAAUCAGAGAAGUAAAAUAAGGAA   1
  |||||||*|||||||||||*||||
targets:26   UUUAGUCCCUUCAUUUUAUACCUU   49

2.5 Sequence 1169 from Patent EP2559767 NA coding protein psRNATarget
JB167801.1
ncRNA:24   AAAUCAGAGAAGUAAAAUAAGGAA   1
  |||||||*|||||||||||||*||
targets:6   UUUAGUCCCUUCAUUUUAUUCAUU   29

2.5 Sequence 5465 from Patent EP2559767 NA coding protein psRNATarget
LQ239470.1
ncRNA:24   AAAUCAGAGAAGUAAAAUAAGGAA   1
  |||||||*|||||||||||||*||
targets:6   UUUAGUCCCUUCAUUUUAUUCAUU   29

2.5 Sequence 5465 from Patent EP2985353 NA coding protein psRNATarget
HI407340.1
ncRNA:24   AAAUCAGAGAAGUAAAAUAAGGAA   1
  |||||||*|||||||||||||*||
targets:6   UUUAGUCCCUUCAUUUUAUUCAUU   29

2.5 Sequence 5465 from Patent EP2074227 NA coding protein psRNATarget
XM_008676145.2
ncRNA:24   AAAUCAGAGAAGUAAAAUAAGGAA   1
  |||=|||*|||||||||||||*||
targets:854   UUUGGUCCCUUCAUUUUAUUCAUU   877

2.5 PREDICTED: Zea mays 23 kDa jasmonate-induced protein-like (LOC103650571), mRNA NA coding protein psRNATarget
AY107219.1
ncRNA:24   AAAUCAGAGAAGUAAAAUAAGGAA   1
  **||-|=||||||||||=||||||
targets:193   GAUA-UUUCUUCAUUUUGUUCCUU   215

2.5 Zea mays PCO090715 mRNA sequence NA coding protein psRNATarget
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