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BaseInfo

ncRNA ID	novel_zma_miR14213
Species	Zea mays
Class	miRNA
Genome position	Chr5:183325698-183325781 [-]
Reference genome	RefGen_v4
Source	SRR2089700
Length	24
Mature sequence(if miRNA)	1 - CGCCAACGCGGGCGAGAGCGGGGC - 24
Stem-loop(if miRNA)	--   A         -   CA     U   CCCCC   -C  CUC   CUC CUCUCGCCC CGU  GUGCG CGC     UCU  GC   C   ||| ||||||||| |||  ||||| |||     |||  ||   C   GGG GAGAGCGGG GCA  CGCGC GCG     AGA  CG   U CG   C         C   AC     -   ----C   CC  CUC
Stem-loop sequence	CUCACUCUCGCCCCGUCAGUGCGUCGCCCCCCUCUCGCCUCCCUCUCGCCCAGACGCGCGCGCCAACGCGGGCGAGAGCGGGGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU943235.1	ncRNA:24   CGGGGCGAGAGCGGGCGCAACCGC   1   |||=|||||||||||||||||||| targets:322   GCCUCGCUCUCGCCCGCGUUGGCG   345 Target Full Sequence	0.0	Zea mays clone 1588860 mRNA sequence	NA	coding protein	psRNATarget
NM_001155239.1	ncRNA:24   CGGGGCGAGAGCGGGCGCAACCGC   1   |==|||||||||=||||||||||| targets:263   GUUCCGCUCUCGUCCGCGUUGGCG   286 Target Full Sequence	1.5	Zea mays exosome complex exonuclease RRP43 (LOC100282327), mRNA	NA	coding protein	psRNATarget
EU960501.1	ncRNA:24   CGGGGCGAGAGCGGGCGCAACCGC   1   |==|||||||||=||||||||||| targets:263   GUUCCGCUCUCGUCCGCGUUGGCG   286 Target Full Sequence	1.5	Zea mays clone 225478 exosome complex exonuclease RRP43 mRNA, complete cds	NA	coding protein	psRNATarget
BT062117.1	ncRNA:24   CGGGGCGAGAGCGGGCGCAACCGC   1   |==|||||||||=||||||||||| targets:276   GUUCCGCUCUCGUCCGCGUUGGCG   299 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0216B14 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020551200.1	ncRNA:24   CGGGGCGAGAGCGGGCGCAACCGC   1   |==||||||||||||||*|||||| targets:178   GUUCCGCUCUCGCCCGCCUUGGCG   201 Target Full Sequence	1.5	PREDICTED: Zea mays exosome complex component RRP43-like (LOC109945350), mRNA	NA	coding protein	psRNATarget
BT036477.1	ncRNA:24   CGGGGCGAGAGCGGGCGCAACCGC   1   |==||||||||||||||*|||||| targets:259   GUUCCGCUCUCGCCCGCCUUGGCG   282 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0118E16 mRNA, complete cds	NA	coding protein	psRNATarget
EU961689.1	ncRNA:24   CGGGGCGAGAGCGGGCGCAACCGC   1   |==||||||||||||||*|||||| targets:332   GUUCCGCUCUCGCCCGCCUUGGCG   355 Target Full Sequence	1.5	Zea mays clone 237640 exosome complex exonuclease RRP43 mRNA, complete cds	NA	coding protein	psRNATarget
BT035321.1	ncRNA:24   CGGGGCGAGAGCGGGCGCAACCGC   1   |==||||||||||||||*|||||| targets:331   GUUCCGCUCUCGCCCGCCUUGGCG   354 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0055D01 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138296.1	ncRNA:24   CGGGGCGAGAGCGGGCGCAACCGC   1   |==||||||||||||||*|||||| targets:331   GUUCCGCUCUCGCCCGCCUUGGCG   354 Target Full Sequence	1.5	Zea mays exosome complex exonuclease RRP43 (LOC100193137), mRNA	NA	coding protein	psRNATarget
XM_008649294.2	ncRNA:24   CGGGGCGAGAGCGGGCGCAACCGC   1   |==||||||||||||||*|||||| targets:348   GUUCCGCUCUCGCCCGCCUUGGCG   371 Target Full Sequence	1.5	PREDICTED: Zea mays exosome complex exonuclease RRP43 (LOC100193137), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001150836.1	ncRNA:24   CGGGGCGAGAGCGGGCGCAACCGC   1   ||=*|||||*||||*||||||||| targets:401   GCUGCGCUCGCGCCGGCGUUGGCG   424 Target Full Sequence	2.5	Zea mays uncharacterized LOC100277199 (pco114187(763)), mRNA	NA	coding protein	psRNATarget
BT040354.1	ncRNA:24   CGGGGCGAGAGCGGGCGCAACCGC   1   ||=*|||||*||||*||||||||| targets:401   GCUGCGCUCGCGCCGGCGUUGGCG   424 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0085J15 mRNA, complete cds	NA	coding protein	psRNATarget
DQ244271.1	ncRNA:24   CGGGGCGAGAGCGGGCGCAACCGC   1   ||=*|||||*||||*||||||||| targets:465   GCUGCGCUCGCGCCGGCGUUGGCG   488 Target Full Sequence	2.5	Zea mays clone 4059 mRNA sequence	NA	coding protein	psRNATarget
EU967324.1	ncRNA:24   CGGGGCGAGAGCGGGCGCAACCGC   1   ||=*|||||*||||*||||||||| targets:642   GCUGCGCUCGCGCCGGCGUUGGCG   665 Target Full Sequence	2.5	Zea mays clone 301504 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget