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BaseInfo

ncRNA ID novel_zma_miR14186
Species Zea mays
Class miRNA
Genome position Chr4:218752961-218753036 [+]
Reference genome RefGen_v4
Source SRR2089699
Length 24
Mature sequence(if miRNA) 1 - AUUUUCGGCGGCCAUGGCAGAGGC - 24
Stem-loop(if miRNA) --                                  UA
  AUUUUCGGCGGCCAUGGCAGAGGCCGCCGAAAAU  C
  ||||||||||||||||||||||||||||||||||
  UAAAAGCCGCCGGUACCGUCUCCGGCGGCUUUUA  G
GU                                  UU
Stem-loop sequence AUUUUCGGCGGCCAUGGCAGAGGCCGCCGAAAAUUACGUUAUUUUCGGCGGCCUCUGCCAUGGCCGCCGAAAAUUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT065567.1
ncRNA:24   CGGAGACGGUACCGGCGGCUUUUA   1
  |||||||*|*||||||||||||||
targets:1103   GCCUCUGACCUGGCCGCCGAAAAU   1126

2.0 Zea mays full-length cDNA clone ZM_BFb0298D06 mRNA, complete cds NA coding protein psRNATarget
XM_020546193.1
ncRNA:24   CGGAGACGGUACCGGCGGCUUUUA   1
  ||||**||=*||||||||||||||
targets:511   GCCUGGGCUCUGGCCGCCGAAAAU   534

3.0 PREDICTED: Zea mays spidroin-1-like (LOC103636899), mRNA NA coding protein psRNATarget
XM_020541736.1
ncRNA:24   CGG-AGACGGUACCGGCGGCUUUUA   1
  ||=-||||=|**|||||||||||||
targets:32   GCUAUCUGUCUCGGCCGCCGAAAAU   56

3.0 PREDICTED: Zea mays proline-rich protein HaeIII subfamily 1-like (LOC109941206), mRNA NA coding protein psRNATarget
XM_020541736.1
ncRNA:24   CG--GA--GACGGUACCGGCGGCUUUUA   1
  ||--||--|||=|**|||||||||||||
targets:70   GCGGCUACCUGUCUCGGCCGCCGAAAAU   97

3.0 PREDICTED: Zea mays proline-rich protein HaeIII subfamily 1-like (LOC109941206), mRNA NA coding protein psRNATarget
EU946477.1
ncRNA:24   CGGAGACGGU-ACCGGCGGCUUUUA   1
  |||*-||=||-||||||||||||||
targets:541   GCCG-UGUCAGUGGCCGCCGAAAAU   564

3.0 Zea mays clone 313395 mRNA sequence NA coding protein psRNATarget