Search result

BaseInfo

ncRNA ID	osa-miRf11014-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	24
Mature sequence(if miRNA)	NA - CUGGAUGAUGCGGUCGAGGAUGCC - NA
Stem-loop(if miRNA)	U  U        A  A   -         -  U   C  ----------        G  G  UG GUAUCCUC GC GCA CGUCCAGAA UG CCU GC          UGGCGGCG CG C  || |||||||| || ||| ||||||||| || ||| ||          |||||||| ||  AC CGUAGGAG UG CGU GUAGGUCUU GC GGA CG          ACCGCCGC GC G A  C        C  G   A         C  -   -  UCCUCUUCUA        G  C
Stem-loop sequence	UUGUGUAUCCUCAGCAGCACGUCCAGAAUGUCCUCGCUGGCGGCGGCGGCGCCGGCGCCGCCAAUCUUCUCCUGCAGGCGCUUCUGGAUGAUGCGGUCGAGGAUGCCCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015787288.1	ncRNA:24   CCGUAGGAGCUGGCGUAGUAGGUC   1   |||||||||||||||||||||||| targets:757   GGCAUCCUCGACCGCAUCAUCCAG   780 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group premnaspirodiene oxygenase (LOC4341624), mRNA	premnaspirodiene oxygenase(LOC4341624)	coding protein	psRNATarget
XM_015786284.1	ncRNA:24   CCGUAGGAGCUGGCGUAGUAGGUC   1   ||||||||||||*||||||||||| targets:990   GGCAUCCUCGACGGCAUCAUCCAG   1013 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group cytochrome P450 71D7 (LOC4341627), mRNA	cytochrome P450 71D7(LOC4341627)	coding protein	psRNATarget
XM_015787082.1	ncRNA:24   CCGUAGGAGCUGGCGUAGUAGGUC   1   |||=||||||||*||||||||||| targets:798   GGCGUCCUCGACGGCAUCAUCCAG   821 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group premnaspirodiene oxygenase (LOC4341626), mRNA	premnaspirodiene oxygenase(LOC4341626)	coding protein	psRNATarget
XM_015776685.1	ncRNA:24   CCGUAGGAGCUGGCGUAGUAGGUC   1   *||=|||*|||||||=|||||||| targets:1573   AGCGUCCCCGACCGCGUCAUCCAG   1596 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein trichome birefringence-like 28 (LOC4332508), mRNA	protein trichome birefringence-like 28(LOC4332508)	coding protein	psRNATarget
AK099139.1	ncRNA:24   CCGUAGGAGCUGGCGUAGUAGGUC   1   *||=|||*|||||||=|||||||| targets:1161   AGCGUCCCCGACCGCGUCAUCCAG   1184 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023050B10, full insert sequence	NA	coding protein	psRNATarget
AK070365.1	ncRNA:24   CCGUAGGAGCUGGCGUAGUAGGUC   1   *||=|||*|||||||=|||||||| targets:1161   AGCGUCCCCGACCGCGUCAUCCAG   1184 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023050A10, full insert sequence	NA	coding protein	psRNATarget
AK064880.1	ncRNA:24   CCGUAGGAGCUGGCGUAGUAGGUC   1   *||=|||*|||||||=|||||||| targets:654   AGCGUCCCCGACCGCGUCAUCCAG   677 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013000J23, full insert sequence	NA	coding protein	psRNATarget
AK060829.1	ncRNA:24   CCGUAGGAGCUGGCGUAGUAGGUC   1   *||=|||*|||||||=|||||||| targets:88   AGCGUCCCCGACCGCGUCAUCCAG   111 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-034-C02, full insert sequence	NA	coding protein	psRNATarget
XM_015785747.1	ncRNA:24   CCGUAGGAGCUGGCGUAGUAGGUC   1   ***|||||||||*||||||||||| targets:925   AAAAUCCUCGACGGCAUCAUCCAG   948 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group premnaspirodiene oxygenase (LOC4341630), mRNA	premnaspirodiene oxygenase(LOC4341630)	coding protein	psRNATarget
XM_015786917.1	ncRNA:24   CCGUAGGAGCUGGCGUAGUAGGUC   1   *||-|||||*|||||||||||||* targets:431   AGC-UCCUCCACCGCAUCAUCCAU   453 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4341696 (LOC4341696), mRNA	uncharacterized LOC4341696(LOC4341696)	coding protein	psRNATarget
XM_015791974.1	ncRNA:24   CCGUAGGAGCUGGCGUAGUAGGUC   1   ||-|-|||||||||||||||||=* targets:503   GG-A-CCUCGACCGCAUCAUCCGC   524 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group microtubule-associated protein SPIRAL2-like (LOC4343400), transcript variant X1, mRNA	microtubule-associated protein SPIRAL2-like(LOC4343400)	coding protein	psRNATarget
AK241222.1	ncRNA:24   CCGUAGGAGCUGGCGUAGUAGGUC   1   ||-|-|||||||||||||||||=* targets:509   GG-A-CCUCGACCGCAUCAUCCGC   530 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065124A13, full insert sequence	NA	coding protein	psRNATarget