Search result

BaseInfo

ncRNA ID	novel_zma_miR14164
Species	Zea mays
Class	miRNA
Genome position	Chr2:153493743-153493822 [+]
Reference genome	RefGen_v4
Source	SRR2089699
Length	24
Mature sequence(if miRNA)	1 - ACUAUGUGUAGAAAACUAGAGGAC - 24
Stem-loop(if miRNA)	--              A   -    A     CA      CA   ACUAUGUGUAGAAA CUA GAGG CUACA  UGAAAU  A   |||||||||||||| ||| |||| |||||  ||||||   UGAUACACAUCUUU GAU CUCU GGUGU  ACUUUG  A UG              G   U    A     -A      AG
Stem-loop sequence	ACUAUGUGUAGAAAACUAGAGGACUACACAUGAAAUCAAAGAGUUUCAAUGUGGAUCUCUUAGGUUUCUACACAUAGUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163670.1	ncRNA:24   CAGGAG-AUCAAAAGAUGUGUAUCA   1   ||=|||-|||*|||||||||||||| targets:142   GUUCUCCUAGGUUUCUACACAUAGU   166 Target Full Sequence	3.0	Sequence 1334 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235339.1	ncRNA:24   CAGGAG-AUCAAAAGAUGUGUAUCA   1   ||=|||-|||*|||||||||||||| targets:142   GUUCUCCUAGGUUUCUACACAUAGU   166 Target Full Sequence	3.0	Sequence 1334 from Patent EP2985353	NA	coding protein	psRNATarget
HI403209.1	ncRNA:24   CAGGAG-AUCAAAAGAUGUGUAUCA   1   ||=|||-|||*|||||||||||||| targets:142   GUUCUCCUAGGUUUCUACACAUAGU   166 Target Full Sequence	3.0	Sequence 1334 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235326.1	ncRNA:24   CAGGAGA-UCAAAAGAUGUGUAUCA   1   ||=||||-||*|||||||||||||| targets:68   GUUCUCUUAGGUUUCUACACAUAGU   92 Target Full Sequence	3.0	Sequence 1321 from Patent EP2985353	NA	coding protein	psRNATarget
JB163657.1	ncRNA:24   CAGGAGA-UCAAAAGAUGUGUAUCA   1   ||=||||-||*|||||||||||||| targets:68   GUUCUCUUAGGUUUCUACACAUAGU   92 Target Full Sequence	3.0	Sequence 1321 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235098.1	ncRNA:24   CAGGAGA-UCAAAAGAUGUGUAUCA   1   ||=||||-||*|||||||||||||| targets:68   GUUCUCUUAGGUUUCUACACAUAGU   92 Target Full Sequence	3.0	Sequence 1093 from Patent EP2985353	NA	coding protein	psRNATarget
HI402968.1	ncRNA:24   CAGGAGA-UCAAAAGAUGUGUAUCA   1   ||=||||-||*|||||||||||||| targets:68   GUUCUCUUAGGUUUCUACACAUAGU   92 Target Full Sequence	3.0	Sequence 1093 from Patent EP2074227	NA	coding protein	psRNATarget
JB163429.1	ncRNA:24   CAGGAGA-UCAAAAGAUGUGUAUCA   1   ||=||||-||*|||||||||||||| targets:68   GUUCUCUUAGGUUUCUACACAUAGU   92 Target Full Sequence	3.0	Sequence 1093 from Patent EP2559767	NA	coding protein	psRNATarget
HI403196.1	ncRNA:24   CAGGAGA-UCAAAAGAUGUGUAUCA   1   ||=||||-||*|||||||||||||| targets:68   GUUCUCUUAGGUUUCUACACAUAGU   92 Target Full Sequence	3.0	Sequence 1321 from Patent EP2074227	NA	coding protein	psRNATarget
HI410095.1	ncRNA:24   CAGGAGA-UCAAAAGAUGUGUAUCA   1   ||=||||-||*|||||||||||||| targets:65   GUUCUCUUAGGUUUCUACACAUAGU   89 Target Full Sequence	3.0	Sequence 8220 from Patent EP2074227	NA	coding protein	psRNATarget
JB170556.1	ncRNA:24   CAGGAGA-UCAAAAGAUGUGUAUCA   1   ||=||||-||*|||||||||||||| targets:65   GUUCUCUUAGGUUUCUACACAUAGU   89 Target Full Sequence	3.0	Sequence 8220 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242225.1	ncRNA:24   CAGGAGA-UCAAAAGAUGUGUAUCA   1   ||=||||-||*|||||||||||||| targets:65   GUUCUCUUAGGUUUCUACACAUAGU   89 Target Full Sequence	3.0	Sequence 8220 from Patent EP2985353	NA	coding protein	psRNATarget
HI403222.1	ncRNA:24   CAGGAGA-UCAAAAGAUGUGUAUCA   1   ||==|||-||*|||||||||||||| targets:136   GUUUUCUUAGGUUUCUACACAUAGU   160 Target Full Sequence	3.0	Sequence 1347 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235352.1	ncRNA:24   CAGGAGA-UCAAAAGAUGUGUAUCA   1   ||==|||-||*|||||||||||||| targets:136   GUUUUCUUAGGUUUCUACACAUAGU   160 Target Full Sequence	3.0	Sequence 1347 from Patent EP2985353	NA	coding protein	psRNATarget
JB163683.1	ncRNA:24   CAGGAGA-UCAAAAGAUGUGUAUCA   1   ||==|||-||*|||||||||||||| targets:136   GUUUUCUUAGGUUUCUACACAUAGU   160 Target Full Sequence	3.0	Sequence 1347 from Patent EP2559767	NA	coding protein	psRNATarget
EU964540.1	ncRNA:24   CA--GGAGAUCAAAAGAUGUGUAUCA   1   ||--|*|||||*||||||||||||*| targets:1091   GUGACAUCUAGCUUUCUACACAUAUU   1116 Target Full Sequence	2.5	Zea mays clone 279735 AT hook motif family protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001254835.1	ncRNA:24   CA--GGAGAUCAAAAGAUGUGUAUCA   1   ||--|*|||||*||||||||||||*| targets:1091   GUGACAUCUAGCUUUCUACACAUAUU   1116 Target Full Sequence	2.5	Zea mays AT hook motif family protein (LOC100856949), mRNA	NA	coding protein	psRNATarget