Search result

BaseInfo

ncRNA ID osa-miRf11013-npr
Species Oryza sativa
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 22
Mature sequence(if miRNA) NA - GGUUUGCCGGAGUUGGAGGAGA - NA
Stem-loop(if miRNA)    -GC    -       AG         UC  - CC   CCCCCUCCCCCUUCCACUCCCACCCCACCCCACCCC  GACCCUAACCCGU
CCA   CAUC CCUCUAG  CCGGCGAAC  CU C  CUC                                    GG             A
|||   |||| |||||||  |||||||||  || |  |||                                    ||
GGU   GUAG GGAGGUU  GGCCGUUUG  GA G  GAG                                    CG             G
   ACA    A       GA         GA  A AA   ----------------------------------AC  CGGCCGCUCCUGG
Stem-loop sequence CCAGCCAUCCCUCUAGAGCCGGCGAACUCCUCCCCUCCCCCCUCCCCCUUCCACUCCCACCCCACCCCACCCCGGGACCCUAACCCGUAGGGUCCUCGCCGGCGCCAGAGAAGAAGAGGUUUGCCGGAGUUGGAGGAGAUGACAUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015778351.1
ncRNA:22   AGAGGAGGUUGAGGCCGUUUGG   1
  **||||||=*||||||||||||
targets:34   AAUCCUCCGCCUCCGGCAAACC   55

2.5 PREDICTED: Oryza sativa Japonica Group UPF0426 protein At1g28150, chloroplastic (LOC4336466), transcript variant X3, mRNA UPF0426 protein At1g28150, chloroplastic(LOC4336466) coding protein psRNATarget
XM_015778352.1
ncRNA:22   AGAGGAGGUUGAGGCCGUUUGG   1
  **||||||=*||||||||||||
targets:34   AAUCCUCCGCCUCCGGCAAACC   55

2.5 PREDICTED: Oryza sativa Japonica Group UPF0426 protein At1g28150, chloroplastic (LOC4336466), transcript variant X4, mRNA UPF0426 protein At1g28150, chloroplastic(LOC4336466) coding protein psRNATarget