Search result

BaseInfo

ncRNA ID	novel_zma_miR14147
Species	Zea mays
Class	miRNA
Genome position	Chr2:219651275-219651358 [+]
Reference genome	RefGen_v4
Source	SRR2089699
Length	24
Mature sequence(if miRNA)	61 - AAAAGUACUCGGUAAAGAAGUCGU - 84
Stem-loop(if miRNA)	--    UU              -------------C   UAACACUCAG   GACU  UCUUUGCCGAGUAC              GAG          C   ||||  ||||||||||||||              |||          A   CUGA  AGAAAUGGCUCAUG              GAG          A UG    --              AAAAAAUAGCCUGU   CCAUCUCUGA
Stem-loop sequence	GACUUUUCUUUGCCGAGUACCGAGUAACACUCAGCAAAGUCUCUACCGAGUGUCCGAUAAAAAAGUACUCGGUAAAGAAGUCGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU957858.1	ncRNA:24   UGCUGAAGAAAUGGCUCAUGAAAA   1   |||=|||*|||||||||||||||| targets:1236   ACGGCUUAUUUACCGAGUACUUUU   1259 Target Full Sequence	1.0	Zea mays clone 1627310 mRNA sequence	NA	coding protein	psRNATarget
EU974507.1	ncRNA:24   UGCUGAAGAAAUGGCUCAUGAAAA   1   ||*=|||||||=|||||||||||| targets:442   ACAGCUUCUUUGCCGAGUACUUUU   465 Target Full Sequence	1.5	Zea mays clone 451014 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
HI407253.1	ncRNA:24   UGCUGAAGAAAUGGCUCAUGAAAA   1   |*|*|||||||=|||||||||||| targets:29   AAGCCUUCUUUGCCGAGUACUUUU   52 Target Full Sequence	1.5	Sequence 5378 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239383.1	ncRNA:24   UGCUGAAGAAAUGGCUCAUGAAAA   1   |*|*|||||||=|||||||||||| targets:29   AAGCCUUCUUUGCCGAGUACUUUU   52 Target Full Sequence	1.5	Sequence 5378 from Patent EP2985353	NA	coding protein	psRNATarget
JB167714.1	ncRNA:24   UGCUGAAGAAAUGGCUCAUGAAAA   1   |*|*|||||||=|||||||||||| targets:29   AAGCCUUCUUUGCCGAGUACUUUU   52 Target Full Sequence	1.5	Sequence 5378 from Patent EP2559767	NA	coding protein	psRNATarget