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BaseInfo

ncRNA ID	ath-miRf10149-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - AUCCCUCGCAAAUUUUGCGA - NA
Stem-loop(if miRNA)	A       CA               UACUACGAACG   ----        AAC UCC UCGCAAA  UUGCGAGGGAUUUGC           CUG    GAACUUGC   U ||| |||||||  |||||||||||||||           |||    ||||||||   C AGG AGCGUUU  AACGCUCCCUAAACG           GAC    UUUGGACG   C    -       UA               UUACUUAUAAA   AUCG        CUC
Stem-loop sequence	UCCAUCGCAAACAUUGCGAGGGAUUUGCUACUACGAACGCUGGAACUUGCAACUCCCUCGCAGGUUUGCUACAGAAAUAUUCAUUGCAAAUCCCUCGCAAAUUUUGCGAGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK230032.1	ncRNA:20   AGCGUUUUAAACGCUCCCUA   1   |||||||=|||||||||||| targets:318   UCGCAAAGUUUGCGAGGGAU   337 Target Full Sequence	1.5	Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL22-57-N05	NA	coding protein	psRNATarget
NM_113908.1	ncRNA:20   AGCGUUUUAAACGCUCCCUA   1   |||||||||||||||*|||* targets:58   UCGCAAAAUUUGCGACGGAA   77 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein partial mRNA	hypothetical protein(AT3G29796)	coding protein	psRNATarget
BT004809.1	ncRNA:20   AGCGUUUUAAACGCUCCCUA   1   |=||*|=||||||||||||| targets:92   UUGCCAGAUUUGCGAGGGAU   111 Target Full Sequence	3.0	Arabidopsis thaliana At5g47520 gene, complete cds	NA	coding protein	psRNATarget
BX831188.1	ncRNA:20   AGCGUUUUAAACGCUCCCUA   1   |=||*|=||||||||||||| targets:476   UUGCCAGAUUUGCGAGGGAU   495 Target Full Sequence	3.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS67ZA02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AK227772.1	ncRNA:20   AGCGUUUUAAACGCUCCCUA   1   |=||*|=||||||||||||| targets:497   UUGCCAGAUUUGCGAGGGAU   516 Target Full Sequence	3.0	Arabidopsis thaliana mRNA for GTP-binding protein-like, complete cds, clone: RAFL14-34-L15	NA	coding protein	psRNATarget
AK222160.1	ncRNA:20   AGCGUUUUAAACGCUCCCUA   1   |=||*|=||||||||||||| targets:497   UUGCCAGAUUUGCGAGGGAU   516 Target Full Sequence	3.0	Arabidopsis thaliana mRNA for GTP-binding protein-like, complete cds, clone: RAFL23-19-B05	NA	coding protein	psRNATarget
NM_124125.4	ncRNA:20   AGCGUUUUAAACGCUCCCUA   1   |=||*|=||||||||||||| targets:500   UUGCCAGAUUUGCGAGGGAU   519 Target Full Sequence	3.0	Arabidopsis thaliana RAB GTPase homolog A5A (RABA5a), mRNA	RAB GTPase homolog A5A(RABA5a)	coding protein	psRNATarget
NM_117124.2	ncRNA:20   AGCGUUUUAAACGCUCCCUA   1   *=||=||||||||||||||* targets:1953   GUGCGAAAUUUGCGAGGGAA   1972 Target Full Sequence	3.0	Arabidopsis thaliana Cysteine/Histidine-rich C1 domain family protein (MEE53), partial mRNA	Cysteine/Histidine-rich C1 domain family protein(MEE53)	coding protein	psRNATarget