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BaseInfo

ncRNA ID novel_zma_miR14080
Species Zea mays
Class miRNA
Genome position Chr6:6103372-6103423 [+]
Reference genome RefGen_v4
Source SRR2089699
Length 24
Mature sequence(if miRNA) 1 - GGAGAUGGACGUGAGAGAGGUGGA - 24
Stem-loop(if miRNA) --  A            A AG    A
  GG GAUGGACGUGAG G  GUGG A
  || |||||||||||| |  |||| A
  CC CUGCUUGUGCUU C  CGCC U
CG  -            C GG    C
Stem-loop sequence GGAGAUGGACGUGAGAGAGGUGGAAAUCCCGCGGCCUUCGUGUUCGUCCCGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT018612.1
ncRNA:24   AGGUGGAGAGAGUGCAGGUAGAGG   1
  |||||||||||||||*||||||||
targets:244   UCCACCUCUCUCACGCCCAUCUCC   267

1.5 Zea mays clone EL01N0501C03.d mRNA sequence NA coding protein psRNATarget
NM_001147147.1
ncRNA:24   AGGUGGAGAGAGUGCAGGUAGAGG   1
  ||==||||*|||||||||*|||||
targets:6   UCUGCCUCACUCACGUCCUUCUCC   29

2.5 Zea mays hypothetical protein (LOC100272692), mRNA NA coding protein psRNATarget
BT039181.1
ncRNA:24   AGGUGGAGAGAGUGCAGGUAGAGG   1
  ||==||||*|||||||||*|||||
targets:6   UCUGCCUCACUCACGUCCUUCUCC   29

2.5 Zea mays full-length cDNA clone ZM_BFb0383G15 mRNA, complete cds NA coding protein psRNATarget
BT067935.1
ncRNA:24   AGGUGGAGAGAGUGCAGGUAGAGG   1
  ||==||||*|||||||||*|||||
targets:24   UCUGCCUCACUCACGUCCUUCUCC   47

2.5 Zea mays full-length cDNA clone ZM_BFb0015I09 mRNA, complete cds NA coding protein psRNATarget