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BaseInfo

ncRNA ID novel_zma_miR14079
Species Zea mays
Class miRNA
Genome position Chr6:120875072-120875198 [-]
Reference genome RefGen_v4
Source SRR2089699;SRR2089700
Length 24
Mature sequence(if miRNA) 1 - AAUAUGAUUUCUAGUGGCGGUUUU - 24
Stem-loop(if miRNA) --                          C                         G  G     
  AACCGCCACUAGAAAUCGUAUUUCUA UGGCGGUUCCUUAAGAAAACCGCCA UA AAAUCC
  |||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||A
  UUGGCGGUGAUCUUUAGUAUAAAGAU ACCGCCAAGGAAUUCUUUUGGCGGU AU UUUAGU
UU                          C                         G  G     
Stem-loop sequence AACCGCCACUAGAAAUCGUAUUUCUACUGGCGGUUCCUUAAGAAAACCGCCAGUAGAAAUCCAUGAUUUGUAGUGGCGGUUUUCUUAAGGAACCGCCACUAGAAAUAUGAUUUCUAGUGGCGGUUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ238012.1
ncRNA:24   UUUUGGCGGUGAUCUUUAGUAUAA   1
  |||||||||||||||||||=||||
targets:37   AAAACCGCCACUAGAAAUCGUAUU   60

1.5 Sequence 4007 from Patent EP2985353 NA coding protein psRNATarget
JB166343.1
ncRNA:24   UUUUGGCGGUGAUCUUUAGUAUAA   1
  |||||||||||||||||||=||||
targets:37   AAAACCGCCACUAGAAAUCGUAUU   60

1.5 Sequence 4007 from Patent EP2559767 NA coding protein psRNATarget
HI405882.1
ncRNA:24   UUUUGGCGGUGAUCUUUAGUAUAA   1
  |||||||||||||||||||=||||
targets:37   AAAACCGCCACUAGAAAUCGUAUU   60

1.5 Sequence 4007 from Patent EP2074227 NA coding protein psRNATarget
JB163445.1
ncRNA:24   UUUUGGCGGUGAUCUUUAGUAUAA   1
  |||||||=||||||||||||||||
targets:15   AAAACCGUCACUAGAAAUCAUAUU   38

1.0 Sequence 1109 from Patent EP2559767 NA coding protein psRNATarget
LQ235114.1
ncRNA:24   UUUUGGCGGUGAUCUUUAGUAUAA   1
  |||||||=||||||||||||||||
targets:15   AAAACCGUCACUAGAAAUCAUAUU   38

1.0 Sequence 1109 from Patent EP2985353 NA coding protein psRNATarget
LQ235116.1
ncRNA:24   UUUUGGCGGUGAUCUUUAGUAUAA   1
  |||||||||||||||||||=||||
targets:15   AAAACCGCCACUAGAAAUCGUAUU   38

1.5 Sequence 1111 from Patent EP2985353 NA coding protein psRNATarget
HI402986.1
ncRNA:24   UUUUGGCGGUGAUCUUUAGUAUAA   1
  |||||||||||||||||||=||||
targets:15   AAAACCGCCACUAGAAAUCGUAUU   38

1.5 Sequence 1111 from Patent EP2074227 NA coding protein psRNATarget
JB163447.1
ncRNA:24   UUUUGGCGGUGAUCUUUAGUAUAA   1
  |||||||||||||||||||=||||
targets:15   AAAACCGCCACUAGAAAUCGUAUU   38

1.5 Sequence 1111 from Patent EP2559767 NA coding protein psRNATarget
HI402984.1
ncRNA:24   UUUUGGCGGUGAUCUUUAGUAUAA   1
  |||||||=||||||||||||||||
targets:15   AAAACCGUCACUAGAAAUCAUAUU   38

1.0 Sequence 1109 from Patent EP2074227 NA coding protein psRNATarget
JB163487.1
ncRNA:24   UUUUGGCGGUGAUCUUUAGUAUAA   1
  |=|||||||||||||||||||*||
targets:33   AGAACCGCCACUAGAAAUCAUUUU   56

1.5 Sequence 1151 from Patent EP2559767 NA coding protein psRNATarget
HI403026.1
ncRNA:24   UUUUGGCGGUGAUCUUUAGUAUAA   1
  |=|||||||||||||||||||*||
targets:33   AGAACCGCCACUAGAAAUCAUUUU   56

1.5 Sequence 1151 from Patent EP2074227 NA coding protein psRNATarget
LQ235156.1
ncRNA:24   UUUUGGCGGUGAUCUUUAGUAUAA   1
  |=|||||||||||||||||||*||
targets:33   AGAACCGCCACUAGAAAUCAUUUU   56

1.5 Sequence 1151 from Patent EP2985353 NA coding protein psRNATarget
XM_008681310.2
ncRNA:24   UUUUGGCGGUGAUCUUUAGUAUAA   1
  *=|||||||||*||||||||||||
targets:910   CGAACCGCCACGAGAAAUCAUAUU   933

1.5 PREDICTED: Zea mays Protein ENHANCED DOWNY MILDEW 2 (LOC103654479), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008681311.2
ncRNA:24   UUUUGGCGGUGAUCUUUAGUAUAA   1
  *=|||||||||*||||||||||||
targets:953   CGAACCGCCACGAGAAAUCAUAUU   976

1.5 PREDICTED: Zea mays Protein ENHANCED DOWNY MILDEW 2 (LOC103654479), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008681312.2
ncRNA:24   UUUUGGCGGUGAUCUUUAGUAUAA   1
  *=|||||||||*||||||||||||
targets:1068   CGAACCGCCACGAGAAAUCAUAUU   1091

1.5 PREDICTED: Zea mays Protein ENHANCED DOWNY MILDEW 2 (LOC103654479), transcript variant X2, mRNA NA coding protein psRNATarget
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