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BaseInfo

ncRNA ID	novel_zma_miR14077
Species	Zea mays
Class	miRNA
Genome position	Chr5:117669210-117669279 [+]
Reference genome	RefGen_v4
Source	SRR2089699;SRR2089708
Length	22
Mature sequence(if miRNA)	49 - ACAGCGCGCGGCCUGAAGCGGA - 70
Stem-loop(if miRNA)	--U         A      ---G C   -A   U  A    GUUUUAGGC GCGCGU    C GAG  CCG GG G    ||||||||| ||||||    | |||  ||| ||    CGAAGUCCG CGCGCG    G UUC  GGU UC G AGG         G      ACAA U   GA   U  A
Stem-loop sequence	UGUUUUAGGCAGCGCGUGCCGAGACCGUGGAGGACUUUGGAGCUUUGAACAGCGCGCGGCCUGAAGCGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT016769.1	ncRNA:22   AGGCGAAGUCCGGCGCGCGACA   1   *|||||||=*|||||||||||| targets:250   GCCGCUUCGUGCCGCGCGCUGU   271 Target Full Sequence	2.5	Zea mays clone Contig602 mRNA sequence	NA	coding protein	psRNATarget
NM_001146819.1	ncRNA:22   AGGCGAAGUCCGGCGCGCGACA   1   *|||||||=*|||||||||||| targets:2   GCCGCUUCGUGCCGCGCGCUGU   23 Target Full Sequence	2.5	Zea mays uncharacterized LOC100272336 (magi9825), mRNA	NA	coding protein	psRNATarget
BT063466.1	ncRNA:22   AGGCGAAGUCCGGCGCGCGACA   1   *|||||||=*|||||||||||| targets:2   GCCGCUUCGUGCCGCGCGCUGU   23 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0066H11 mRNA, complete cds	NA	coding protein	psRNATarget
X74656.1	ncRNA:22   AGGCGAAGUCCGGCGCGCGACA   1   *|||||||=*|||||||||||| targets:233   GCCGCUUCGUGCCGCGCGCUGU   254 Target Full Sequence	2.5	Z.mays mRNA for beta 5 tubulin	NA	coding protein	psRNATarget
NM_001111988.1	ncRNA:22   AGGCGAAGUCCGGCGCGCGACA   1   *|||||||=*|||||||||||| targets:233   GCCGCUUCGUGCCGCGCGCUGU   254 Target Full Sequence	2.5	Zea mays beta-5 tubulin (TUBB5), mRNA	NA	coding protein	psRNATarget
XM_008675211.2	ncRNA:22   AGGCGAAGUCCGGCGCGCGACA   1   *|||||||=*|||||||||||| targets:315   GCCGCUUCGUGCCGCGCGCUGU   336 Target Full Sequence	2.5	PREDICTED: Zea mays beta-5 tubulin (TUBB5), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY103690.2	ncRNA:22   AGGCGAAGUCCGGCGCGCGACA   1   *|||||||=*|||||||||||| targets:373   GCCGCUUCGUGCCGCGCGCUGU   394 Target Full Sequence	2.5	Zea mays PCO144028 mRNA sequence	NA	coding protein	psRNATarget
XM_008656299.2	ncRNA:22   AGGCGAAGUCCGGCGCGCGACA   1   *|||||||=*|||||||||||| targets:442   GCCGCUUCGUGCCGCGCGCUGU   463 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100272336 (magi9825), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU947689.1	ncRNA:22   AG-GCGAAGUCCGGCGCGCGACA   1   ||-||||*|||||||=||||||| targets:322   UCGCGCUCCAGGCCGUGCGCUGU   344 Target Full Sequence	2.5	Zea mays clone 352767 mRNA sequence	NA	coding protein	psRNATarget
EU947689.1	ncRNA:22   AGGCGAAGUCCGGCGCGCGACA   1   **||||*||||||||||||*|| targets:394   CGCGCUCCAGGCCGCGCGCCGU   415 Target Full Sequence	2.5	Zea mays clone 352767 mRNA sequence	NA	coding protein	psRNATarget
XM_020548385.1	ncRNA:22   AG-GCGAAGUCCGGCGCGCGACA   1   ||-||||*||||||||||||*|| targets:395   UCGCGCUCCAGGCCGCGCGCCGU   417 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382600 (LOC100382600), mRNA	NA	coding protein	psRNATarget
XM_020543045.1	ncRNA:22   AGGCGAAGUCCGGCGCGCGACA   1   *||||*|*=||||||||||||| targets:64   ACCGCGUGGGGCCGCGCGCUGU   85 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC109941818 (LOC109941818), mRNA	NA	coding protein	psRNATarget
BT064855.1	ncRNA:22   AGGCGAAGUCCGGCGCGCGACA   1   **||||*||||||||||||*|| targets:38   CGCGCUCCAGGCCGCGCGCCGU   59 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0218H22 mRNA, complete cds	NA	coding protein	psRNATarget