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BaseInfo

ncRNA ID novel_zma_miR14054
Species Zea mays
Class miRNA
Genome position Chr4:14711115-14711229 [+]
Reference genome RefGen_v4
Source SRR2089699
Length 23
Mature sequence(if miRNA) 93 - AGGGUCGGACGGUCCGCGAUGGC - 115
Stem-loop(if miRNA) ---GG       G    AC      AG  -          ---     -C     AC   AU
     CGCGGAC GUCC  GGCUCU  GC UGGACUGUCC   GCGAC  AGGGA  AGG  C
     ||||||| ||||  ||||||  || ||||||||||   |||||  |||||  |||  G
     GCGCCUG CAGG  CUGGGA  CG GCCUGGUAGG   CGCUG  UCCCU  UCC  A
CGGUA       G    --      CG  U          UCA     CA     --   GU
Stem-loop sequence GGCGCGGACGGUCCACGGCUCUAGGCUGGACUGUCCGCGACCAGGGAACAGGAUCGAUGCCUUCCCUACGUCGCACUGGAUGGUCCGUGCGCAGGGUCGGACGGUCCGCGAUGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ241875.1
ncRNA:23   CGGUAGCGCCUGGCAGGCUGGGA   1
  |||||||=||||||||||||||*
targets:19   GCCAUCGUGGACCGUCCGACCCG   41

2.0 Sequence 7870 from Patent EP2985353 NA coding protein psRNATarget
JB170206.1
ncRNA:23   CGGUAGCGCCUGGCAGGCUGGGA   1
  |||||||=||||||||||||||*
targets:19   GCCAUCGUGGACCGUCCGACCCG   41

2.0 Sequence 7870 from Patent EP2559767 NA coding protein psRNATarget
HI409745.1
ncRNA:23   CGGUAGCGCCUGGCAGGCUGGGA   1
  |||||||=||||||||||||||*
targets:19   GCCAUCGUGGACCGUCCGACCCG   41

2.0 Sequence 7870 from Patent EP2074227 NA coding protein psRNATarget
EU948904.1
ncRNA:23   CGGUAGCGCCUGGCAGGCUGGGA   1
  |*||*|||||||||||||*||||
targets:518   GACAACGCGGACCGUCCGCCCCU   540

2.5 Zea mays clone 389441 mRNA sequence NA coding protein psRNATarget
EU949034.1
ncRNA:23   CGGUAGCGCCUGGCAGGCUGGGA   1
  |*||*|||||||||||||*||||
targets:519   GACAACGCGGACCGUCCGCCCCU   541

2.5 Zea mays clone 394358 mRNA sequence NA coding protein psRNATarget
EZ067064.1
ncRNA:23   CGGUAGCGCCUGGCAGGCUGGGA   1
  *=***|||||||||||||*||||
targets:26   CUGCGCGCGGACCGUCCGCCCCU   48

2.5 TSA: Zea mays contig02698, mRNA sequence NA coding protein psRNATarget
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