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BaseInfo

ncRNA ID	novel_zma_miR14012
Species	Zea mays
Class	miRNA
Genome position	Chr2:5776049-5776153 [-]
Reference genome	RefGen_v4
Source	SRR2089698;SRR2089703;SRR2089706;SRR2089708
Length	24
Mature sequence(if miRNA)	1 - AAACUAAAGUGGAAUAAAAUGGAG - 24
Stem-loop(if miRNA)	--   A                CAC        C              A      CUA UUUAUUCCACUUUAGU   UAAAUUGU AAAUAUGGAAACUA AAUA   ||| ||||||||||||||||   |||||||| |||||||||||||| |||G   GGU AAAUAAGGUGAAAUCA   AUUUAACG UUUAUACCUUUGAU UUGA GA   A                AAU        U              A
Stem-loop sequence	CUAAUUUAUUCCACUUUAGUCACUAAAUUGUCAAAUAUGGAAACUAAAAUAGAGUUAUAGUUUCCAUAUUUUGCAAUUUAUAAACUAAAGUGGAAUAAAAUGGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008651702.2	ncRNA:24   GAGGUAAAAUAAGGUGAAAUCAAA   1   |||||||||||||||||||||||* targets:487   CUCCAUUUUAUUCCACUUUAGUUC   510 Target Full Sequence	1.0	PREDICTED: Zea mays type IV inositol polyphosphate 5-phosphatase 3 (LOC103630655), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008647122.2	ncRNA:24   GAGGUAAAAUAAGGUGAAAUCAAA   1   ||||||||||||||||||||||*| targets:2994   CUCCAUUUUAUUCCACUUUAGUCU   3017 Target Full Sequence	1.5	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008647123.2	ncRNA:24   GAGGUAAAAUAAGGUGAAAUCAAA   1   ||||||||||||||||||||||*| targets:2605   CUCCAUUUUAUUCCACUUUAGUCU   2628 Target Full Sequence	1.5	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X2, mRNA	NA	coding protein	psRNATarget
JB163513.1	ncRNA:24   GAGGUAAAAUAAGGUGAAAUCAAA   1   ||=||||||||||||=|||||||* targets:34   CUUCAUUUUAUUCCAUUUUAGUUC   57 Target Full Sequence	2.5	Sequence 1177 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235182.1	ncRNA:24   GAGGUAAAAUAAGGUGAAAUCAAA   1   ||=||||||||||||=|||||||* targets:34   CUUCAUUUUAUUCCAUUUUAGUUC   57 Target Full Sequence	2.5	Sequence 1177 from Patent EP2985353	NA	coding protein	psRNATarget
HI403052.1	ncRNA:24   GAGGUAAAAUAAGGUGAAAUCAAA   1   ||=||||||||||||=|||||||* targets:34   CUUCAUUUUAUUCCAUUUUAGUUC   57 Target Full Sequence	2.5	Sequence 1177 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008660555.2	ncRNA:24   GAGGUAAAAUAAGGUGAAAUCAAA   1   ||*||||||||||||||||||||* targets:1922   CUACAUUUUAUUCCACUUUAGUUC   1945 Target Full Sequence	1.0	PREDICTED: Zea mays pentatricopeptide repeat protein PPR566-6 (LOC100381697), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU957896.1	ncRNA:24   GAG-GUAAAAUAAGGUGAAAUCAAA   1   ||=-||||||||||||||||||||* targets:1274   CUUACAUUUUAUUCCACUUUAGUUA   1298 Target Full Sequence	1.0	Zea mays clone 1630391 mRNA sequence	NA	coding protein	psRNATarget
NM_001139183.1	ncRNA:24   GAG--GUAAAAUAAGGUGAAAUCAAA   1   |||--||||||||||||=|||||||* targets:845   CUCUACAUUUUAUUCCAUUUUAGUUC   870 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100194130), mRNA	NA	coding protein	psRNATarget
BT036582.1	ncRNA:24   GAG--GUAAAAUAAGGUGAAAUCAAA   1   |||--||||||||||||=|||||||* targets:845   CUCUACAUUUUAUUCCAUUUUAGUUC   870 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0124H18 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020542840.1	ncRNA:24   GAGGUAAAAUAAGGUGAAAUCAAA   1   ||*||||||||||||=|||||||* targets:1004   CUACAUUUUAUUCCAUUUUAGUUC   1027 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103636172), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020553397.1	ncRNA:24   GAGGUAAAAUAAGGUGAAAUCAAA   1   ||*||||||||||||=|||||||* targets:584   CUACAUUUUAUUCCAUUUUAGUUG   607 Target Full Sequence	2.5	PREDICTED: Zea mays SANT/MYB protein (LOC100284980), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB163910.1	ncRNA:23   AGGUAAAAUAAGGUGAAAUCAAA   1   ||||*|||||||||=|||||||| targets:1   UCCACUUUAUUCCAUUUUAGUUU   23 Target Full Sequence	2.5	Sequence 1574 from Patent EP2559767	NA	coding protein	psRNATarget
HI403449.1	ncRNA:23   AGGUAAAAUAAGGUGAAAUCAAA   1   ||||*|||||||||=|||||||| targets:1   UCCACUUUAUUCCAUUUUAGUUU   23 Target Full Sequence	2.5	Sequence 1574 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235579.1	ncRNA:23   AGGUAAAAUAAGGUGAAAUCAAA   1   ||||*|||||||||=|||||||| targets:1   UCCACUUUAUUCCAUUUUAGUUU   23 Target Full Sequence	2.5	Sequence 1574 from Patent EP2985353	NA	coding protein	psRNATarget
EZ052166.1	ncRNA:24   GAGG----UAAAAUAAGGUGAAAUCAAA   1   *|||----|||||||||||=|||||||| targets:780   GUCCCUAGAUUUUAUUCCAUUUUAGUUU   807 Target Full Sequence	1.5	TSA: Zea mays contig53286, mRNA sequence	NA	coding protein	psRNATarget