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BaseInfo

ncRNA ID novel_zma_miR13995
Species Zea mays
Class miRNA
Genome position Chr1:71497397-71497469 [+]
Reference genome RefGen_v4
Source SRR2089698;SRR2089707
Length 22
Mature sequence(if miRNA) 1 - CAUGCUUGUGGAUUUGUCGCGG - 22
Stem-loop(if miRNA) CAUG  UG    UUUG      G     ---A    ---  G
    CU  UGGA    UCGCGG UCGGG    CCGA   CC G
    ||  ||||    |||||| |||||    ||||   ||
    GA  ACCU    AGCGCC AGCCU    GGCU   GG A
----  GU    --CG      -     GCCG    UUA  G
Stem-loop sequence CAUGCUUGUGGAUUUGUCGCGGGUCGGGACCGACCGGAGGGAUUUCGGGCCGUCCGACCGCGAGCUCCAUGAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020548888.1
ncRNA:22   GGCGCUGUUUAGGUGUUCGUAC   1
  |||||||||||||||||||*||
targets:194   CCGCGACAAAUCCACAAGCUUG   215

1.5 PREDICTED: Zea mays 50S ribosomal protein L2, chloroplastic-like (LOC109944200), mRNA NA coding protein psRNATarget
AY111993.1
ncRNA:22   GGCGCUGUUUAGGUGUUCGUAC   1
  |*|=|||||||||||||||||*
targets:683   CGGUGACAAAUCCACAAGCAUA   704

2.0 Zea mays CL50607_1 mRNA sequence NA coding protein psRNATarget