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BaseInfo

ncRNA ID	novel_zma_miR13974
Species	Zea mays
Class	miRNA
Genome position	Chr9:125246801-125246887 [-]
Reference genome	RefGen_v4
Source	SRR2089698
Length	24
Mature sequence(if miRNA)	1 - GUCGCCAGCGCGGGGUAGGAGGAG - 24
Stem-loop(if miRNA)	-C  A         A   C      AAA   - G  AGAU  A   C   CC CCUGCCUCG UGC GGCGGC   GCA C CC    CG GGG U   || ||||||||| ||| ||||||   ||| | ||    || ||| C   GG GGAUGGGGC GCG CCGCUG   CGU G GG    GC CCC G GA  A         -   A      --A   A A  ----  -   A
Stem-loop sequence	CCCACCUGCCUCGAUGCCGGCGGCAAAGCACGCCAGAUCGAGGGCUCGACCCCGGGAGAUGCAGUCGCCAGCGCGGGGUAGGAGGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU943639.1	ncRNA:24   GAGGAGGAUGGGGCGCGACCGCUG   1   *||||||||||||||||||||||| targets:1334   GUCCUCCUACCCCGCGCUGGCGAC   1357 Target Full Sequence	0.0	Zea mays clone 1666751 mRNA sequence	NA	coding protein	psRNATarget
XM_020540296.1	ncRNA:24   GAGGAGGAUGGGGCGCGACCGCUG   1   *||||||||||||||||||||||| targets:618   GUCCUCCUACCCCGCGCUGGCGAC   641 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100192521 (LOC100192521), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008660954.2	ncRNA:24   GAGGAGGAUGGGGCGCGACCGCUG   1   |||||||||||*|||||||||||| targets:268   CUCCUCCUACCGCGCGCUGGCGAC   291 Target Full Sequence	1.5	PREDICTED: Zea mays Anaphase-promoting complex subunit 4 (LOC103637954), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008660953.2	ncRNA:24   GAGGAGGAUGGGGCGCGACCGCUG   1   |||||||||||*|||||||||||| targets:268   CUCCUCCUACCGCGCGCUGGCGAC   291 Target Full Sequence	1.5	PREDICTED: Zea mays Anaphase-promoting complex subunit 4 (LOC103637954), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546417.1	ncRNA:24   GAGGAGGAUGGGGCGCGACCGCUG   1   |||||||||||*|||||||||||| targets:65   CUCCUCCUACCGCGCGCUGGCGAC   88 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized WD repeat-containing protein alr3466-like (LOC103637587), mRNA	NA	coding protein	psRNATarget
XM_008658066.2	ncRNA:24   GAGG------AGGAUGGGGCGCGACCGCUG   1   =|||------|||||||||||||||||||| targets:423   UUCCCCGCAUUCCUACCCCGCGCUGGCGAC   452 Target Full Sequence	0.0	PREDICTED: Zea mays putative mitochondrial transcription termination factor family protein (mTRF8), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020544541.1	ncRNA:24   GAGG------AGGAUGGGGCGCGACCGCUG   1   =|||------|||||||||||||||||||| targets:498   UUCCCCGCAUUCCUACCCCGCGCUGGCGAC   527 Target Full Sequence	0.0	PREDICTED: Zea mays putative mitochondrial transcription termination factor family protein (mTRF8), transcript variant X2, mRNA	NA	coding protein	psRNATarget