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BaseInfo

ncRNA ID novel_zma_miR13971
Species Zea mays
Class miRNA
Genome position Chr1:197545805-197545848 [+]
Reference genome RefGen_v4
Source SRR2089698;SRR2089703
Length 20
Mature sequence(if miRNA) 25 - GGCAGGAGGUAGGUAGCUUA - 44
Stem-loop(if miRNA) --           -   GU   A
  AGUUGCUUGCC CCU  GCC A
  ||||||||||| |||  ||| A
  UCGAUGGAUGG GGA  CGG C
AU           A   --   U
Stem-loop sequence AGUUGCUUGCCCCUGUGCCAAACUGGCAGGAGGUAGGUAGCUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT085563.2
ncRNA:20   AUUCGAUGGAUGGAGGACGG   1
  ||||||||||||||||||||
targets:474   UAAGCUACCUACCUCCUGCC   493

0.0 Zea mays full-length cDNA clone ZM_BFc0034D18 mRNA, complete cds NA coding protein psRNATarget
EU947918.1
ncRNA:20   AUUCGAUGGAUGGAGGACGG   1
  ||||||||||||||||||||
targets:1008   UAAGCUACCUACCUCCUGCC   1027

0.0 Zea mays clone 366228 mRNA sequence NA coding protein psRNATarget