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BaseInfo

ncRNA ID	novel_zma_miR13962
Species	Zea mays
Class	miRNA
Genome position	Chr8:154708079-154708202 [-]
Reference genome	RefGen_v4
Source	SRR2089698
Length	22
Mature sequence(if miRNA)	103 - UUUGUUUGGGAGUAAGGGCAAU - 124
Stem-loop(if miRNA)	--                G C   A      -     A       U     UC       CAA   UUUGUUUGGGAGUAAG G AAU GAGGGG AUUGA GGGGCUA AAUCC  CACUAUU   U   |||||||||||||||| | ||| |||||| ||||| ||||||| |||||  |||||||   GAACAAACCCUUGUUC C UUA CUUCUC UAACU CCCCGAU UUAGG  GUGAUAA   U CC                A A   -      A     A       C     GA       AUU
Stem-loop sequence	UUUGUUUGGGAGUAAGGGCAAUAGAGGGGAUUGAAGGGGCUAUAAUCCUCCACUAUUCAAUUUUAAAUAGUGAGGGAUUCUAGCCCCAUCAAUACUCUUCAUUACACUUGUUCCCAAACAAGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU968858.1	ncRNA:22   UAACGGGAAUGAGGGUUUGUUU   1   |||*||=||||||||||||||= targets:1164   AUUACCUUUACUCCCAAACAAG   1185 Target Full Sequence	3.0	Zea mays clone 324588 mRNA sequence	NA	coding protein	psRNATarget
AY104107.2	ncRNA:22   UAACGGGAAUGAGGGUUUGUUU   1   |||*||=||||||||||||||= targets:1305   AUUACCUUUACUCCCAAACAAG   1326 Target Full Sequence	3.0	Zea mays PCO062189 mRNA sequence	NA	coding protein	psRNATarget
BT033702.1	ncRNA:22   UAACGGGAAUGAGGGUUUGUUU   1   |||*||=||||||||||||||= targets:1057   AUUACCUUUACUCCCAAACAAG   1078 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0115E06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137008.1	ncRNA:22   UAACGGGAAUGAGGGUUUGUUU   1   |||*||=||||||||||||||= targets:1057   AUUACCUUUACUCCCAAACAAG   1078 Target Full Sequence	3.0	Zea mays calcineurin B-like protein (CBL1), mRNA	NA	coding protein	psRNATarget
JB166403.1	ncRNA:22   UAACGGGAAUGAGGGUUUGUUU   1   |||*||=||||||||||||||= targets:105   AUUACCUUUACUCCCAAACAAG   126 Target Full Sequence	3.0	Sequence 4067 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238080.1	ncRNA:22   UAACGGGAAUGAGGGUUUGUUU   1   |||*||=||||||||||||||= targets:105   AUUACCUUUACUCCCAAACAAG   126 Target Full Sequence	3.0	Sequence 4075 from Patent EP2985353	NA	coding protein	psRNATarget
HI405942.1	ncRNA:22   UAACGGGAAUGAGGGUUUGUUU   1   |||*||=||||||||||||||= targets:105   AUUACCUUUACUCCCAAACAAG   126 Target Full Sequence	3.0	Sequence 4067 from Patent EP2074227	NA	coding protein	psRNATarget
JB166411.1	ncRNA:22   UAACGGGAAUGAGGGUUUGUUU   1   |||*||=||||||||||||||= targets:105   AUUACCUUUACUCCCAAACAAG   126 Target Full Sequence	3.0	Sequence 4075 from Patent EP2559767	NA	coding protein	psRNATarget
HI405950.1	ncRNA:22   UAACGGGAAUGAGGGUUUGUUU   1   |||*||=||||||||||||||= targets:105   AUUACCUUUACUCCCAAACAAG   126 Target Full Sequence	3.0	Sequence 4075 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238072.1	ncRNA:22   UAACGGGAAUGAGGGUUUGUUU   1   |||*||=||||||||||||||= targets:105   AUUACCUUUACUCCCAAACAAG   126 Target Full Sequence	3.0	Sequence 4067 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020549567.1	ncRNA:22   UAACGGGAAUGAGGGUUUGUUU   1   |*|*|||||||||||||||||= targets:1085   AAUCCCCUUACUCCCAAACAAG   1106 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC100273482), transcript variant X1, mRNA	NA	coding protein	psRNATarget