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BaseInfo

ncRNA ID novel_zma_miR13961
Species Zea mays
Class miRNA
Genome position Chr8:161084318-161084422 [-]
Reference genome RefGen_v4
Source SRR2089698
Length 24
Mature sequence(if miRNA) 1 - AGACUAUAGUGGAAUAAAAUGGAG - 24
Stem-loop(if miRNA) --   A           U     AC        C           A  A   
  CUA UUUAUUCCACU UAGUC  UAAAUUGU AAAUAUGGAAA UA AAUA
  ||| ||||||||||| |||||  |||||||| ||||||||||| || |||G
  GGU AAAUAAGGUGA AUCAG  AUUUAACG UUUAUAUCUUU AU UUGA
GA   A           U     AU        U           G  A   
Stem-loop sequence CUAAUUUAUUCCACUUUAGUCACUAAAUUGUCAAAUAUGGAAAAUAAAAUAGAGUUAUAGUUUCUAUAUUUUGCAAUUUAUAGACUAUAGUGGAAUAAAAUGGAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008647122.2
ncRNA:24   GAGGUAAAAUAAGGUGAUAUCAGA   1
  |||||||||||||||||*||||||
targets:2994   CUCCAUUUUAUUCCACUUUAGUCU   3017

1.5 PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008647123.2
ncRNA:24   GAGGUAAAAUAAGGUGAUAUCAGA   1
  |||||||||||||||||*||||||
targets:2605   CUCCAUUUUAUUCCACUUUAGUCU   2628

1.5 PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X2, mRNA NA coding protein psRNATarget