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BaseInfo

ncRNA ID	novel_zma_miR13958
Species	Zea mays
Class	miRNA
Genome position	Chr7:12029634-12029681 [+]
Reference genome	RefGen_v4
Source	SRR2089698
Length	21
Mature sequence(if miRNA)	1 - UGCGAGAUGGAACACAAGGGA - 21
Stem-loop(if miRNA)	--          AAC     GGAGA   UGCGAGAUGG   ACAAG     A   ||||||||||   |||||   ACGCUCUAUU   UGUUC     A CC          --A     GACGC
Stem-loop sequence	UGCGAGAUGGAACACAAGGGAGAAACGCAGCUUGUAUUAUCUCGCACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ241611.1	ncRNA:21   AGGGAACACAAGGUAGAGCGU   1   *|||||||||||||||||||= targets:39   CCCCUUGUGUUCCAUCUCGCG   59 Target Full Sequence	1.0	Sequence 7606 from Patent EP2985353	NA	coding protein	psRNATarget
JB169942.1	ncRNA:21   AGGGAACACAAGGUAGAGCGU   1   *|||||||||||||||||||= targets:39   CCCCUUGUGUUCCAUCUCGCG   59 Target Full Sequence	1.0	Sequence 7606 from Patent EP2559767	NA	coding protein	psRNATarget
HI409481.1	ncRNA:21   AGGGAACACAAGGUAGAGCGU   1   *|||||||||||||||||||= targets:39   CCCCUUGUGUUCCAUCUCGCG   59 Target Full Sequence	1.0	Sequence 7606 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008654039.1	ncRNA:21   AGGGAACACAAGGUAGAGCGU   1   *|||||||||||||||||||= targets:1179   CCCCUUGUGUUCCAUCUCGCG   1199 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103632220 (LOC103632220), mRNA	NA	coding protein	psRNATarget
XM_008654039.1	ncRNA:21   AGGGAACACAAGGUAGAGCGU   1   *|||||||||||||||||||= targets:1392   CCCCUUGUGUUCCAUCUCGCG   1412 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103632220 (LOC103632220), mRNA	NA	coding protein	psRNATarget
EU952221.1	ncRNA:21   AGGGAACACAAGGUAGAGCGU   1   *|||||||||||||||||||= targets:1185   CCCCUUGUGUUCCAUCUCGCG   1205 Target Full Sequence	1.0	Zea mays clone 1229283 mRNA sequence	NA	coding protein	psRNATarget
EU952221.1	ncRNA:21   AGGGAACACAAGGUAGAGCGU   1   *|||||||||||||||||||= targets:1398   CCCCUUGUGUUCCAUCUCGCG   1418 Target Full Sequence	1.0	Zea mays clone 1229283 mRNA sequence	NA	coding protein	psRNATarget
LQ241641.1	ncRNA:21   AGGGAACACAAGGUAGAGCGU   1   *||=||||||||||||||||= targets:44   CCCUUUGUGUUCCAUCUCGCG   64 Target Full Sequence	2.0	Sequence 7636 from Patent EP2985353	NA	coding protein	psRNATarget
HI409511.1	ncRNA:21   AGGGAACACAAGGUAGAGCGU   1   *||=||||||||||||||||= targets:44   CCCUUUGUGUUCCAUCUCGCG   64 Target Full Sequence	2.0	Sequence 7636 from Patent EP2074227	NA	coding protein	psRNATarget
JB169972.1	ncRNA:21   AGGGAACACAAGGUAGAGCGU   1   *||=||||||||||||||||= targets:44   CCCUUUGUGUUCCAUCUCGCG   64 Target Full Sequence	2.0	Sequence 7636 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008661742.2	ncRNA:21   AGGGAA-CACAAGGUAGAGCGU   1   *|||||-||||||||||||||= targets:519   ACCCUUAGUGUUCCAUCUCGCG   540 Target Full Sequence	3.0	PREDICTED: Zea mays cortical cell-delineating protein-like (LOC103638956), mRNA	NA	coding protein	psRNATarget
EU940832.1	ncRNA:21   AGGGAACACAAGGUAGAGCGU   1   *|=|||||||||||||*|||| targets:519   CCUCUUGUGUUCCAUCCCGCA   539 Target Full Sequence	2.5	Zea mays clone 1157618 mRNA sequence	NA	coding protein	psRNATarget