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BaseInfo

ncRNA ID	novel_zma_miR13955
Species	Zea mays
Class	miRNA
Genome position	Chr7:122350479-122350612 [+]
Reference genome	RefGen_v4
Source	SRR2089698
Length	24
Mature sequence(if miRNA)	1 - GAGGGCAUGUUCGGUUACACCAAU - 24
Stem-loop(if miRNA)	--G     A                 UC           A   GA A       CU U        A    AGGGC UGUUCGGUUACACCAAU  AGAGGGGGAUU GAG  G UUAAAUC  C UUUAGUUA A    ||||| |||||||||||||||||  ||||||||||| |||  | |||||||  | ||||||||    UCCCG ACAAGCCAAUGUGGUUA  UCUCCCCCUAA CUC  C AAUUUAG  G AGAUUAGU A AAG     A                 GA           C   UC A       AG C        A
Stem-loop sequence	GAGGGCAUGUUCGGUUACACCAAUUCAGAGGGGGAUUAGAGGAGAUUAAAUCCUCUUUUAGUUAAAAAUGAUUAGACGGAGAUUUAAACCUCUCCAAUCCCCCUCUAGAUUGGUGUAACCGAACAAGCCCUGAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU968801.1	ncRNA:24   UAACCACAUUGGCUUGUACGGGAG   1   |||||||||||||||||||||||= targets:550   AUUGGUGUAACCGAACAUGCCCUU   573 Target Full Sequence	1.0	Zea mays clone 324211 protein transport protein SEC61 gamma subunit mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157439.1	ncRNA:24   UAACCACAUUGGCUUGUACGGGAG   1   |||||||||||||||||||||||= targets:550   AUUGGUGUAACCGAACAUGCCCUU   573 Target Full Sequence	1.0	Zea mays protein transport protein SEC61 gamma subunit (LOC100284544), mRNA	NA	coding protein	psRNATarget
XM_020542894.1	ncRNA:24   UAACCACAUUGGCUUGUACGGGAG   1   |||||||||||||||||||||||* targets:22   AUUGGUGUAACCGAACAUGCCCUG   45 Target Full Sequence	1.0	PREDICTED: Zea mays LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1 (LOC103636763), partial mRNA	NA	coding protein	psRNATarget
XM_020548160.1	ncRNA:24   UAACCACAUUGGCUUGUACGGGAG   1   |||||||||||||||||*|||||* targets:4819   AUUGGUGUAACCGAACAAGCCCUG   4842 Target Full Sequence	2.5	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008670752.2	ncRNA:24   UAACCACAUUGGCUUGUACGGGAG   1   |||||||||||||||||*|||||* targets:5046   AUUGGUGUAACCGAACAAGCCCUG   5069 Target Full Sequence	2.5	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT035338.1	ncRNA:24   UAACCACAUUGGCUUGUACGGGAG   1   =|||||||||||||||||*||||= targets:1130   GUUGGUGUAACCGAACAUACCCUU   1153 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0056C20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138309.1	ncRNA:24   UAACCACAUUGGCUUGUACGGGAG   1   =|||||||||||||||||*||||= targets:1130   GUUGGUGUAACCGAACAUACCCUU   1153 Target Full Sequence	2.5	Zea mays uncharacterized LOC100193152 (LOC100193152), mRNA	NA	coding protein	psRNATarget
JB169178.1	ncRNA:24   UAACCACAUUGGCUUGUACGGGAG   1   ||||||*|||*||||||||||||* targets:37   AUUGGUCUAAGCGAACAUGCCCUG   60 Target Full Sequence	3.0	Sequence 6842 from Patent EP2559767	NA	coding protein	psRNATarget
HI408717.1	ncRNA:24   UAACCACAUUGGCUUGUACGGGAG   1   ||||||*|||*||||||||||||* targets:37   AUUGGUCUAAGCGAACAUGCCCUG   60 Target Full Sequence	3.0	Sequence 6842 from Patent EP2074227	NA	coding protein	psRNATarget
LQ240847.1	ncRNA:24   UAACCACAUUGGCUUGUACGGGAG   1   ||||||*|||*||||||||||||* targets:37   AUUGGUCUAAGCGAACAUGCCCUG   60 Target Full Sequence	3.0	Sequence 6842 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238926.1	ncRNA:24   UAACCACAUUGGCUUGUACGGGAG   1   ||||*||||||||||||*|||||* targets:118   AUUGAUGUAACCGAACAAGCCCUA   141 Target Full Sequence	2.5	Sequence 4921 from Patent EP2985353	NA	coding protein	psRNATarget
JB167257.1	ncRNA:24   UAACCACAUUGGCUUGUACGGGAG   1   ||||*||||||||||||*|||||* targets:118   AUUGAUGUAACCGAACAAGCCCUA   141 Target Full Sequence	2.5	Sequence 4921 from Patent EP2559767	NA	coding protein	psRNATarget
HI406796.1	ncRNA:24   UAACCACAUUGGCUUGUACGGGAG   1   ||||*||||||||||||*|||||* targets:118   AUUGAUGUAACCGAACAAGCCCUA   141 Target Full Sequence	2.5	Sequence 4921 from Patent EP2074227	NA	coding protein	psRNATarget
EU957179.1	ncRNA:24   UAACCACAUUGGCUUGUACGGGAG   1   ||*||||||||||||||*|||||* targets:1585   AUCGGUGUAACCGAACAAGCCCUG   1608 Target Full Sequence	2.5	Zea mays clone 1584995 mRNA sequence	NA	coding protein	psRNATarget
AY110812.1	ncRNA:24   UAAC-CACAUUGGCUUGUACGGGAG   1   ||||-|*|*|||||||||||||||= targets:208   AUUGAGGGGAACCGAACAUGCCCUU   232 Target Full Sequence	3.0	Zea mays CL13054_1 mRNA sequence	NA	coding protein	psRNATarget