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BaseInfo

ncRNA ID	novel_zma_miR13943
Species	Zea mays
Class	miRNA
Genome position	Chr1:288347970-288348093 [+]
Reference genome	RefGen_v4
Source	SRR1583942
Length	25
Mature sequence(if miRNA)	100 - GAAAUACGAUUUUUAGUGGCAGUUU - 124
Stem-loop(if miRNA)	--ACC              -       C             A        CCAC              GCCACUAGAAAUCG AUUUCUA AGGUGGUUUCUUA GAAAACCG    UAGAAAUCA      |||||||||||||| ||||||| ||||||||||||| ||||||||    ||||||||U      CGGUGAUUUUUAGC UAAAGAU UCCGCCAAGGAAU CUUUUGGC    AUCUUUAGA UUUGA              A       C             A        AUAC
Stem-loop sequence	ACCGCCACUAGAAAUCGAUUUCUACAGGUGGUUUCUUAAGAAAACCGCCACUAGAAAUCAUAGAUUUCUACAUACGGUUUUCAUAAGGAACCGCCUCUAGAAAUACGAUUUUUAGUGGCAGUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB166343.1	ncRNA:25   UUUGACGGUGAUUUUUAGCAUAAAG   1   ||||*|||||||=|||||||||||| targets:38   AAACCGCCACUAGAAAUCGUAUUUC   62 Target Full Sequence	1.5	Sequence 4007 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238012.1	ncRNA:25   UUUGACGGUGAUUUUUAGCAUAAAG   1   ||||*|||||||=|||||||||||| targets:38   AAACCGCCACUAGAAAUCGUAUUUC   62 Target Full Sequence	1.5	Sequence 4007 from Patent EP2985353	NA	coding protein	psRNATarget
HI405882.1	ncRNA:25   UUUGACGGUGAUUUUUAGCAUAAAG   1   ||||*|||||||=|||||||||||| targets:38   AAACCGCCACUAGAAAUCGUAUUUC   62 Target Full Sequence	1.5	Sequence 4007 from Patent EP2074227	NA	coding protein	psRNATarget
HI402986.1	ncRNA:25   UUUGACGGUGAUUUUUAGCAUAAAG   1   ||||*|||||||=|||||||||||= targets:16   AAACCGCCACUAGAAAUCGUAUUUU   40 Target Full Sequence	2.5	Sequence 1111 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235116.1	ncRNA:25   UUUGACGGUGAUUUUUAGCAUAAAG   1   ||||*|||||||=|||||||||||= targets:16   AAACCGCCACUAGAAAUCGUAUUUU   40 Target Full Sequence	2.5	Sequence 1111 from Patent EP2985353	NA	coding protein	psRNATarget
JB163447.1	ncRNA:25   UUUGACGGUGAUUUUUAGCAUAAAG   1   ||||*|||||||=|||||||||||= targets:16   AAACCGCCACUAGAAAUCGUAUUUU   40 Target Full Sequence	2.5	Sequence 1111 from Patent EP2559767	NA	coding protein	psRNATarget