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BaseInfo

ncRNA ID	novel_zma_miR13941
Species	Zea mays
Class	miRNA
Genome position	Chr6:130480417-130480502 [+]
Reference genome	RefGen_v4
Source	SRR2089698
Length	24
Mature sequence(if miRNA)	1 - AGAGGUAGGCAGAGUAGGAGAGAC - 24
Stem-loop(if miRNA)	A   GU   C    U  -     ACGC  --AG    CU    C  GAG  AGG AGAG AG GAGAG    GG    GAGG  AGCU A  |||  ||| |||| || |||||    ||    ||||  |||| G  CUC  UCC UCUC UC CUCUC    CC    CUCC  UCGA A G   UC   C    -  A     -AAA  GGAA    AC    C
Stem-loop sequence	AGAGGUAGGCAGAGUAGGAGAGACGCGGAGGAGGCUAGCUCAGACAGCUCACCUCAAGGCCAAACUCUCACUCUCUCCCUCUCUCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU952154.1	ncRNA:24   CAGAGAGGAUGAGACGGAUGGAGA   1   ||||||||*|||||||||=||||| targets:743   GUCUCUCCAACUCUGCCUGCCUCU   766 Target Full Sequence	2.5	Zea mays clone 1213567 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU943868.1	ncRNA:24   CAGA-GAGGAUGAGACGGAUGGAGA   1   |||*-=|=||||||||||||||||* targets:442   GUCGGUUUCUACUCUGCCUACCUCG   466 Target Full Sequence	2.0	Zea mays clone 1695716 mRNA sequence	NA	coding protein	psRNATarget
EU962190.1	ncRNA:24   CAGA-GAGGAUGAGACGGAUGGAGA   1   |||*-=|=||||||||||||||||* targets:437   GUCGGUUUCUACUCUGCCUACCUCG   461 Target Full Sequence	2.0	Zea mays clone 240869 mRNA sequence	NA	coding protein	psRNATarget
AY103538.1	ncRNA:24   CAGA-GAGGAUGAGACGGAUGGAGA   1   |||*-=|=||||||||||||||||* targets:549   GUCGGUUUCUACUCUGCCUACCUCG   573 Target Full Sequence	2.0	Zea mays PCO150589 mRNA sequence	NA	coding protein	psRNATarget
XM_008672056.2	ncRNA:24   CAGA-GAGGAUGAGACGGAUGGAGA   1   |||*-=|=||||||||||||||||* targets:618   GUCGGUUUCUACUCUGCCUACCUCG   642 Target Full Sequence	2.0	PREDICTED: Zea mays heat shock protein 81-1 (LOC103647533), mRNA	NA	coding protein	psRNATarget
EU965936.1	ncRNA:24   CAGAGAGGAUGAGACGGAUGGAGA   1   |*||||*|*=|||||||||||||| targets:32   GCCUCUGCGGCUCUGCCUACCUCU   55 Target Full Sequence	3.0	Zea mays clone 290138 RING finger protein 5 mRNA, complete cds	NA	coding protein	psRNATarget