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BaseInfo

ncRNA ID	novel_zma_miR13939
Species	Zea mays
Class	miRNA
Genome position	Chr6:84408248-84408413 [+]
Reference genome	RefGen_v4
Source	SRR2089698
Length	24
Mature sequence(if miRNA)	1 - GGCACUCGGCAAAGGGACUGGCAU - 24
Stem-loop(if miRNA)	--            AG    U  CA   -      -   ----   ---  AC      CCGAGUGCCAGUCCACUAGACACUCGGCAA   GGCACUCGGCAA  GGAC GG  UAG GGGCCC ACU    GGA   GG  UCUUUG                              A   ||||||||||||  |||| ||  ||| |||||| |||    |||   ||  ||||||                              G   CCGUGAGCCGUU  UCUG CC  AUC CCCGGG UGG    CAG   CA  CGGCUC                              A UU            --    C  AG   A      G   CGGU   AGA  --      UCGAGAGCAUCCGUGAGCUGUUUCCUCCGA
Stem-loop sequence	GGCACUCGGCAAAGGGACUGGCAUAGGGGCCCACUGGAGGACUCUUUGCCGAGUGCCAGUCCACUAGACACUCGGCAAAGAAGCCUCCUUUGUCGAGUGCCUACGAGAGCUCUCGGCACAGAGACUGGCGGUGGGGCCCACUAGACCCGUCUUUGCCGAGUGCCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU942524.1	ncRNA:24   UACGGUCAGGGAAACGGCUCACGG   1   *||||*|||||||*|||||||||| targets:289   UUGCCCGUCCCUUCGCCGAGUGCC   312 Target Full Sequence	2.5	Zea mays clone 1513654 mRNA sequence	NA	coding protein	psRNATarget
EU962802.1	ncRNA:24   UACGGUCAGGGAAACGGCUCACGG   1   =||||=|*|*|||||||||||||| targets:838   GUGCCGGACGCUUUGCCGAGUGCC   861 Target Full Sequence	3.0	Zea mays clone 245661 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
HI406772.1	ncRNA:22   CG--GUCAGGGAAACGGCUCACGG   1   ||--|||***|||||||||||||| targets:1   GCGACAGAGACUUUGCCGAGUGCC   24 Target Full Sequence	3.0	Sequence 4897 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238902.1	ncRNA:22   CG--GUCAGGGAAACGGCUCACGG   1   ||--|||***|||||||||||||| targets:1   GCGACAGAGACUUUGCCGAGUGCC   24 Target Full Sequence	3.0	Sequence 4897 from Patent EP2985353	NA	coding protein	psRNATarget
JB167233.1	ncRNA:22   CG--GUCAGGGAAACGGCUCACGG   1   ||--|||***|||||||||||||| targets:1   GCGACAGAGACUUUGCCGAGUGCC   24 Target Full Sequence	3.0	Sequence 4897 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241826.1	ncRNA:24   UACGGUCAGGGAAACGGCUCACGG   1   |****||*|=|||||||||||||| targets:35   AAAGAAGCCUCUUUGCCGAGUGCC   58 Target Full Sequence	2.0	Sequence 7821 from Patent EP2985353	NA	coding protein	psRNATarget
JB170157.1	ncRNA:24   UACGGUCAGGGAAACGGCUCACGG   1   |****||*|=|||||||||||||| targets:35   AAAGAAGCCUCUUUGCCGAGUGCC   58 Target Full Sequence	2.0	Sequence 7821 from Patent EP2559767	NA	coding protein	psRNATarget
HI409696.1	ncRNA:24   UACGGUCAGGGAAACGGCUCACGG   1   |****||*|=|||||||||||||| targets:35   AAAGAAGCCUCUUUGCCGAGUGCC   58 Target Full Sequence	2.0	Sequence 7821 from Patent EP2074227	NA	coding protein	psRNATarget