Search result

BaseInfo

ncRNA ID novel_zma_miR13935
Species Zea mays
Class miRNA
Genome position Chr6:136575738-136575879 [-]
Reference genome RefGen_v4
Source SRR2089698;SRR2089704
Length 24
Mature sequence(if miRNA) 119 - ACUAAGGGCGUGUUUGGUGUGGCG - 142
Stem-loop(if miRNA) --A  A                                   C  U                       -  
   CU AGGGCGUGUUUGGUGUGGCGCCUAAGCCGCCACAC GC CCACACUUUUAAGCCACAAGUGU GGC
   || ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||G
   GA UCCCGCACAAACCACACCGCGGAUUCGGCGGUGUG CG GGUGUGAAAAUUCGGUGUUCACA CCG
CCA  A                                   A  C                       A  
Stem-loop sequence ACUAAGGGCGUGUUUGGUGUGGCGCCUAAGCCGCCACACCGCUCCACACUUUUAAGCCACAAGUGUGGCGGCCAACACUUGUGGCUUAAAAGUGUGGCGCAGUGUGGCGGCUUAGGCGCCACACCAAACACGCCCUAAGACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AY110402.2
ncRNA:24   GCGGUGUGGUUUGUGCGGGAAUCA   1
  |||-|*||||||||||=|||||||
targets:352   CGC-AAACCAAACACGUCCUUAGU   374

2.5 Zea mays CL2596_1 mRNA sequence NA coding protein psRNATarget
XM_020552994.1
ncRNA:24   GCGGUGUGGUUUGUGCGGGAAUCA   1
  =***=*||||||||=|||||||||
targets:473   UAAGGAACCAAACAUGCCCUUAGU   496

2.5 PREDICTED: Zea mays Glycine-rich RNA-binding protein RZ1C (TIDP3245), transcript variant X1, mRNA NA coding protein psRNATarget