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BaseInfo

ncRNA ID	novel_zma_miR13934
Species	Zea mays
Class	miRNA
Genome position	Chr6:118897494-118897674 [-]
Reference genome	RefGen_v4
Source	SRR1583942
Length	23
Mature sequence(if miRNA)	1 - AAAAAUCUGCGGAAACCAAACGC - 23
Stem-loop(if miRNA)	--         A G         A        -AU UUAAGAAUAUAUUAUGGAUCCAAACAGAGUUUAUUCUGUGCCUUAGAUUCUGCGC   GUUUGGUUU C GUAGAUUUU AGAAUCUG   U                                                       U   ||||||||| | ||||||||| ||||||||   |                                                       C   CAAACCAAA G CGUCUAAAA UUUUAGAC   C                                                       A CG         - G         A        GUA AAGUGCAAUGGGUUCUUUUGGGUUGAUACCGAACUAAGAUGUCUAAAACAAAGAU
Stem-loop sequence	GUUUGGUUUACGGUAGAUUUUAAGAAUCUGAUUUUAAGAAUAUAUUAUGGAUCCAAACAGAGUUUAUUCUGUGCCUUAGAUUCUGCGCUCAUAGAAACAAAAUCUGUAGAAUCAAGCCAUAGUUGGGUUUUCUUGGGUAACGUGAACAUGCAGAUUUUAAAAAUCUGCGGAAACCAAACGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU970052.1	ncRNA:23   CGCAAACCAAAGGCGUCUAAAAA   1   |=||||||||||||||||||||| targets:691   GUGUUUGGUUUCCGCAGAUUUUU   713 Target Full Sequence	0.0	Zea mays clone 339098 mRNA sequence	NA	coding protein	psRNATarget
BT039465.1	ncRNA:23   CGCAAACCAAAGGCGUCUAAAAA   1   |=||||||||||||||||||||| targets:969   GUGUUUGGUUUCCGCAGAUUUUU   991 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0014M11 mRNA, complete cds	NA	coding protein	psRNATarget
AF035460.1	ncRNA:23   CGCAAACCAAAGGCGUCUAAAAA   1   |=||||||||||||||||||||| targets:985   GUGUUUGGUUUCCGCAGAUUUUU   1007 Target Full Sequence	0.0	Zea mays low molecular weight heat shock protein precursor (hsp22) mRNA, nuclear gene encoding mitochondrial protein, complete cds	NA	coding protein	psRNATarget
NM_001112137.1	ncRNA:23   CGCAAACCAAAGGCGUCUAAAAA   1   |=||||||||||||||||||||| targets:985   GUGUUUGGUUUCCGCAGAUUUUU   1007 Target Full Sequence	0.0	Zea mays low molecular weight heat shock protein precursor (hsp22), mRNA	NA	coding protein	psRNATarget
AY104434.1	ncRNA:23   CGCAAACCAAAGGCGUCUAAAAA   1   |=||||||||||||||||||||| targets:995   GUGUUUGGUUUCCGCAGAUUUUU   1017 Target Full Sequence	0.0	Zea mays PCO116068 mRNA sequence	NA	coding protein	psRNATarget
XM_008679574.1	ncRNA:23   CGCAAACCAAAGGCGUCUAAAAA   1   |=||||||||||||||||||||| targets:1013   GUGUUUGGUUUCCGCAGAUUUUU   1035 Target Full Sequence	0.0	PREDICTED: Zea mays low molecular weight heat shock protein precursor (hsp22), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU960464.1	ncRNA:23   CGCAAACCAAAGGCGUCUAAAAA   1   |=||||||||||||||||||||| targets:1005   GUGUUUGGUUUCCGCAGAUUUUU   1027 Target Full Sequence	0.0	Zea mays clone 225103 heat shock 22 kDa protein mRNA, complete cds	NA	coding protein	psRNATarget