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BaseInfo

ncRNA ID	novel_zma_miR13930
Species	Zea mays
Class	miRNA
Genome position	Chr1:287593303-287593498 [+]
Reference genome	RefGen_v4
Source	SRR1583942
Length	24
Mature sequence(if miRNA)	1 - CUAGGUGCAAUCGUGCAAGCAGCU - 24
Stem-loop(if miRNA)	--C              C    A C   C                 A    C GU       GUAAUUG    UUG     GGC        AAA     A    UAGGUGCAAUCGUG AAGC G UCU UUGGUCUGUUAGAUCUA GAUC A  CGUAUGU       UGGU   UUAGG   UUUUUUAU   GCUAC U    |||||||||||||| |||| | ||| ||||||||||||||||| |||| |  |||||||       ||||   |||||   ||||||||   ||||| G    AUCCACGUUAGCAC UUCG C AGA AACCAGGCAAUCUAGAU CUAG U  GCAUACG       AUCG   AAUUU   GGAGGGUG   UGGUG A GUA              A    A C   A                 -    A UG       -GUAUAA    -UA     --A        --G     G
Stem-loop sequence	CUAGGUGCAAUCGUGCAAGCAGCUCUCUUGGUCUGUUAGAUCUAAGAUCCAGUCGUAUGUGUAAUUGUGGUUUGUUAGGGGCUUUUUUAUAAAGCUACAUGAGGUGGUGGUGGGAGGAUUUAAAUGCUAAAUAUGGCAUACGGUUAGAUCUAGAUCUAACGGACCAAAAGACCAGCUUACACGAUUGCACCUAAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020543506.1	ncRNA:24   UC-GACGAACGUGCUAACGUGGAUC   1   ||-||||||*||||*|||||||||| targets:821   AGUCUGCUUACACGCUUGCACCUAG   845 Target Full Sequence	2.5	PREDICTED: Zea mays putative RING zinc finger domain superfamily protein (LOC100216754), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008645849.1	ncRNA:24   UCGA-CGAACGUGCUAACGUGGAUC   1   *|||-|||||||||*|||||||||* targets:2135   UGCUUGCUUGCACGCUUGCACCUAA   2159 Target Full Sequence	2.5	PREDICTED: Zea mays putative AGC protein kinase family protein (LOC100383454), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020537890.1	ncRNA:24   UCGA-CGAACGUGCUAACGUGGAUC   1   *|||-|||||||||*|||||||||* targets:2587   UGCUUGCUUGCACGCUUGCACCUAA   2611 Target Full Sequence	2.5	PREDICTED: Zea mays probable serine/threonine protein kinase IREH1 (LOC103625948), transcript variant X1, mRNA	NA	coding protein	psRNATarget