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BaseInfo

ncRNA ID	novel_zma_miR13919
Species	Zea mays
Class	miRNA
Genome position	Chr5:210712072-210712156 [-]
Reference genome	RefGen_v4
Source	SRR2089698
Length	20
Mature sequence(if miRNA)	66 - CCAGAAGGGGAUUGGAGGAG - 85
Stem-loop(if miRNA)	-C    A            A           C         A   CAGA GGGGAUUGGAGG GUUUGAAUCUU UCCUAGUCA A   |||| |||||||||||| ||||||||||| |||||||||   GUCU CCCUUAAUCUCC CAAAUUUAGAG AGGAUUAGU A UA    C            A           C         A
Stem-loop sequence	CCAGAAGGGGAUUGGAGGAGUUUGAAUCUUCUCCUAGUCAAAAAUGAUUAGGACGAGAUUUAAACACCUCUAAUUCCCCUCUGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001157439.1	ncRNA:20   GAGGAGGUUAGGGGAAGACC   1   |||||||=|||||||||||* targets:530   CUCCUCCGAUCCCCUUCUGA   549 Target Full Sequence	2.5	Zea mays protein transport protein SEC61 gamma subunit (LOC100284544), mRNA	NA	coding protein	psRNATarget
EU968801.1	ncRNA:20   GAGGAGGUUAGGGGAAGACC   1   |||||||=|||||||||||* targets:530   CUCCUCCGAUCCCCUUCUGA   549 Target Full Sequence	2.5	Zea mays clone 324211 protein transport protein SEC61 gamma subunit mRNA, complete cds	NA	coding protein	psRNATarget
EZ049235.1	ncRNA:20   GAGGAGGUUAGGGGAAGACC   1   |*|||=|||||||||||||| targets:2   CCCCUUCAAUCCCCUUCUGG   21 Target Full Sequence	2.0	TSA: Zea mays contig50353, mRNA sequence	NA	coding protein	psRNATarget
JB163489.1	ncRNA:20   GAGGAGGUUAGGGGAAGACC   1   |*||||||||||||*||||| targets:85   CCCCUCCAAUCCCCAUCUGG   104 Target Full Sequence	2.5	Sequence 1153 from Patent EP2559767	NA	coding protein	psRNATarget
HI403028.1	ncRNA:20   GAGGAGGUUAGGGGAAGACC   1   |*||||||||||||*||||| targets:85   CCCCUCCAAUCCCCAUCUGG   104 Target Full Sequence	2.5	Sequence 1153 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235158.1	ncRNA:20   GAGGAGGUUAGGGGAAGACC   1   |*||||||||||||*||||| targets:85   CCCCUCCAAUCCCCAUCUGG   104 Target Full Sequence	2.5	Sequence 1153 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238926.1	ncRNA:20   GAGGAGGUUAGGGGAAGACC   1   |*||||||||*||||||||| targets:98   CCCCUCCAAUACCCUUCUGG   117 Target Full Sequence	2.5	Sequence 4921 from Patent EP2985353	NA	coding protein	psRNATarget
JB167257.1	ncRNA:20   GAGGAGGUUAGGGGAAGACC   1   |*||||||||*||||||||| targets:98   CCCCUCCAAUACCCUUCUGG   117 Target Full Sequence	2.5	Sequence 4921 from Patent EP2559767	NA	coding protein	psRNATarget
HI406796.1	ncRNA:20   GAGGAGGUUAGGGGAAGACC   1   |*||||||||*||||||||| targets:98   CCCCUCCAAUACCCUUCUGG   117 Target Full Sequence	2.5	Sequence 4921 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020540164.1	ncRNA:20   GAGGAGGUUAGGGGAAGACC   1   |*||||||||||||*||||| targets:1605   CCCCUCCAAUCCCCCUCUGG   1624 Target Full Sequence	2.5	PREDICTED: Zea mays Cysteine-rich repeat secretory protein 3 (LOC107521955), transcript variant X1, mRNA	NA	coding protein	psRNATarget