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BaseInfo

ncRNA ID	novel_zma_miR13917
Species	Zea mays
Class	miRNA
Genome position	Chr5:209449678-209449758 [+]
Reference genome	RefGen_v4
Source	SRR2089698;SRR2089702
Length	20
Mature sequence(if miRNA)	1 - GGAGGGAAUUGGAGGGGCUA - 20
Stem-loop(if miRNA)	--     GA                  AUCUUCUCAUCCA   GGAGG  AUUGGAGGGGCUAGAAUC             A   |||||  ||||||||||||||||||             A   CCUUC  UAACCUCCCCGAUCUUAG             A GU     UC                  AAAAAAAAUAAAU
Stem-loop sequence	GGAGGGAAUUGGAGGGGCUAGAAUCAUCUUCUCAUCCAAAAUAAAUAAAAAAAAGAUUCUAGCCCCUCCAAUCUCUUCCUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403389.1	ncRNA:20   AUCGGGGAGGUUAAGGGAGG   1   |||||||||||||||||||| targets:74   UAGCCCCUCCAAUUCCCUCC   93 Target Full Sequence	0.0	Sequence 1514 from Patent EP2074227	NA	coding protein	psRNATarget
JB163850.1	ncRNA:20   AUCGGGGAGGUUAAGGGAGG   1   |||||||||||||||||||| targets:74   UAGCCCCUCCAAUUCCCUCC   93 Target Full Sequence	0.0	Sequence 1514 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235519.1	ncRNA:20   AUCGGGGAGGUUAAGGGAGG   1   |||||||||||||||||||| targets:74   UAGCCCCUCCAAUUCCCUCC   93 Target Full Sequence	0.0	Sequence 1514 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020539411.1	ncRNA:20   AUCGGGGAGGUUAAGGGAGG   1   |||||||||||||*|||||| targets:3500   UAGCCCCUCCAAUCCCCUCC   3519 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:20   AUCGGGGAGGUUAAGGGAGG   1   |||||||||||||*|||||| targets:3535   UAGCCCCUCCAAUCCCCUCC   3554 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
AY108273.1	ncRNA:20   AUCGGGGAGGUUAAGGGAGG   1   |||||||||||||*|||||= targets:332   UAGCCCCUCCAAUCCCCUCU   351 Target Full Sequence	2.5	Zea mays PCO108913 mRNA sequence	NA	coding protein	psRNATarget
BT017648.1	ncRNA:20   AUCGGGGAGGUUAAGGGAGG   1   *||||=|||||||*|||||| targets:167   AAGCCUCUCCAAUCCCCUCC   186 Target Full Sequence	2.5	Zea mays clone EL01N0439D04.c mRNA sequence	NA	coding protein	psRNATarget
BT065170.1	ncRNA:20   AUCGGGGAGGUUAAGGGAGG   1   ||*||||||||||*|||||| targets:684   UAUCCCCUCCAAUCCCCUCC   703 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008667867.1	ncRNA:20   AUCGGGGAGGUUAAGGGAGG   1   ||*||||||||||*|||||| targets:1031   UAACCCCUCCAAUCCCCUCC   1050 Target Full Sequence	2.5	PREDICTED: Zea mays 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (LOC103644703), mRNA	NA	coding protein	psRNATarget
XM_008670893.2	ncRNA:20   AUCGGGGAGGUUAAGGGAGG   1   ||*||||||||||*|||||| targets:1564   UAUCCCCUCCAAUCCCCUCC   1583 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008670890.2	ncRNA:20   AUCGGGGAGGUUAAGGGAGG   1   ||*||||||||||*|||||| targets:1584   UAUCCCCUCCAAUCCCCUCC   1603 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670892.2	ncRNA:20   AUCGGGGAGGUUAAGGGAGG   1   ||*||||||||||*|||||| targets:1608   UAUCCCCUCCAAUCCCCUCC   1627 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670891.2	ncRNA:20   AUCGGGGAGGUUAAGGGAGG   1   ||*||||||||||*|||||| targets:1641   UAUCCCCUCCAAUCCCCUCC   1660 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA	NA	coding protein	psRNATarget