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BaseInfo

ncRNA ID novel_zma_miR13904
Species Zea mays
Class miRNA
Genome position Chr4:189228958-189229007 [-]
Reference genome RefGen_v4
Source SRR2089698
Length 24
Mature sequence(if miRNA) 1 - AAAGAUUAUUGAACUGGUGGUGGA - 24
Stem-loop(if miRNA) --A     -     GU        U
   ACCAU GGUUU  UAGUUUUU U
   ||||| |||||  |||||||| U
   UGGUG UCAAG  AUUAGAAA A
AGG     G     UU        U
Stem-loop sequence AACCAUGGUUUGUUAGUUUUUUUUAUAAAGAUUAUUGAACUGGUGGUGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ235229.1
ncRNA:24   AGGUGGUGGUCAAGUUAUUAGAAA   1
  ||||||||=|||||||||||||||
targets:102   UCCACCACUAGUUCAAUAAUCUUU   125

1.0 Sequence 1224 from Patent EP2985353 NA coding protein psRNATarget
JB163560.1
ncRNA:24   AGGUGGUGGUCAAGUUAUUAGAAA   1
  ||||||||=|||||||||||||||
targets:102   UCCACCACUAGUUCAAUAAUCUUU   125

1.0 Sequence 1224 from Patent EP2559767 NA coding protein psRNATarget
HI403099.1
ncRNA:24   AGGUGGUGGUCAAGUUAUUAGAAA   1
  ||||||||=|||||||||||||||
targets:102   UCCACCACUAGUUCAAUAAUCUUU   125

1.0 Sequence 1224 from Patent EP2074227 NA coding protein psRNATarget
HI403187.1
ncRNA:24   AGGUGGUGGUCAAGUUAUUAGAAA   1
  |||||||||||*||||||||||||
targets:95   UCCACCACCAGCUCAAUAAUCUUU   118

1.5 Sequence 1312 from Patent EP2074227 NA coding protein psRNATarget
JB163648.1
ncRNA:24   AGGUGGUGGUCAAGUUAUUAGAAA   1
  |||||||||||*||||||||||||
targets:95   UCCACCACCAGCUCAAUAAUCUUU   118

1.5 Sequence 1312 from Patent EP2559767 NA coding protein psRNATarget
LQ235317.1
ncRNA:24   AGGUGGUGGUCAAGUUAUUAGAAA   1
  |||||||||||*||||||||||||
targets:95   UCCACCACCAGCUCAAUAAUCUUU   118

1.5 Sequence 1312 from Patent EP2985353 NA coding protein psRNATarget
HI403015.1
ncRNA:24   AGGUGGUGGUCAAGUUAUUAGAAA   1
  |||||=|||||*||||||||||||
targets:71   UCCACUACCAGCUCAAUAAUCUUU   94

2.5 Sequence 1140 from Patent EP2074227 NA coding protein psRNATarget
LQ235145.1
ncRNA:24   AGGUGGUGGUCAAGUUAUUAGAAA   1
  |||||=|||||*||||||||||||
targets:71   UCCACUACCAGCUCAAUAAUCUUU   94

2.5 Sequence 1140 from Patent EP2985353 NA coding protein psRNATarget
JB163476.1
ncRNA:24   AGGUGGUGGUCAAGUUAUUAGAAA   1
  |||||=|||||*||||||||||||
targets:71   UCCACUACCAGCUCAAUAAUCUUU   94

2.5 Sequence 1140 from Patent EP2559767 NA coding protein psRNATarget
LQ241182.1
ncRNA:24   AGGUGGUGGUCAAGUUAUUAGAAA   1
  |=|||||||||*||||||||||||
targets:103   UUCACCACCAGCUCAAUAAUCUUU   126

1.5 Sequence 7177 from Patent EP2985353 NA coding protein psRNATarget
JB169513.1
ncRNA:24   AGGUGGUGGUCAAGUUAUUAGAAA   1
  |=|||||||||*||||||||||||
targets:103   UUCACCACCAGCUCAAUAAUCUUU   126

1.5 Sequence 7177 from Patent EP2559767 NA coding protein psRNATarget
HI409052.1
ncRNA:24   AGGUGGUGGUCAAGUUAUUAGAAA   1
  |=|||||||||*||||||||||||
targets:103   UUCACCACCAGCUCAAUAAUCUUU   126

1.5 Sequence 7177 from Patent EP2074227 NA coding protein psRNATarget
EU972964.1
ncRNA:24   AGGUGGUGGUCAAGUUAUUAGAAA   1
  |=|||||||||*||||||||||||
targets:2128   UUCACCACCAGCUCAAUAAUCUUU   2151

1.5 Zea mays clone 390894 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001151629.1
ncRNA:24   AGGUGGUGGUCAAGUUAUUAGAAA   1
  |=|||||||||*||||||||||||
targets:2128   UUCACCACCAGCUCAAUAAUCUUU   2151

1.5 Zea mays uncharacterized LOC100278316 (si946092e03), mRNA NA coding protein psRNATarget
LQ235586.1
ncRNA:24   AGGUGGUGGUCAAGUUAUUAGAAA   1
  ||=|||||=||*||||||||||||
targets:98   UCUACCACUAGCUCAAUAAUCUUU   121

2.5 Sequence 1581 from Patent EP2985353 NA coding protein psRNATarget
HI403456.1
ncRNA:24   AGGUGGUGGUCAAGUUAUUAGAAA   1
  ||=|||||=||*||||||||||||
targets:98   UCUACCACUAGCUCAAUAAUCUUU   121

2.5 Sequence 1581 from Patent EP2074227 NA coding protein psRNATarget
JB163917.1
ncRNA:24   AGGUGGUGGUCAAGUUAUUAGAAA   1
  ||=|||||=||*||||||||||||
targets:98   UCUACCACUAGCUCAAUAAUCUUU   121

2.5 Sequence 1581 from Patent EP2559767 NA coding protein psRNATarget
LQ235474.1
ncRNA:24   AGGUGGUGGUCAAGUUAUUAGAAA   1
  |||||||*|||*||||||||||||
targets:95   UCCACCAACAGCUCAAUAAUCUUU   118

2.5 Sequence 1469 from Patent EP2985353 NA coding protein psRNATarget
HI403344.1
ncRNA:24   AGGUGGUGGUCAAGUUAUUAGAAA   1
  |||||||*|||*||||||||||||
targets:95   UCCACCAACAGCUCAAUAAUCUUU   118

2.5 Sequence 1469 from Patent EP2074227 NA coding protein psRNATarget
JB163805.1
ncRNA:24   AGGUGGUGGUCAAGUUAUUAGAAA   1
  |||||||*|||*||||||||||||
targets:95   UCCACCAACAGCUCAAUAAUCUUU   118

2.5 Sequence 1469 from Patent EP2559767 NA coding protein psRNATarget
LQ235277.1
ncRNA:24   AGGUGGUGGUCAAGUUAUUAGAAA   1
  |||||||*|||*||||||||||||
targets:95   UCCACCAGCAGCUCAAUAAUCUUU   118

2.5 Sequence 1272 from Patent EP2985353 NA coding protein psRNATarget
JB163608.1
ncRNA:24   AGGUGGUGGUCAAGUUAUUAGAAA   1
  |||||||*|||*||||||||||||
targets:95   UCCACCAGCAGCUCAAUAAUCUUU   118

2.5 Sequence 1272 from Patent EP2559767 NA coding protein psRNATarget
HI403147.1
ncRNA:24   AGGUGGUGGUCAAGUUAUUAGAAA   1
  |||||||*|||*||||||||||||
targets:95   UCCACCAGCAGCUCAAUAAUCUUU   118

2.5 Sequence 1272 from Patent EP2074227 NA coding protein psRNATarget
XM_008664646.2
ncRNA:24   AGGUGGUGGUCAAGUUAUUAGAAA   1
  ||||||||*||*||||||||||||
targets:298   UCCACCACAAGCUCAAUAAUCUUU   321

2.5 PREDICTED: Zea mays O-methyltransferase MdmC (LOC103641291), transcript variant X6, mRNA NA coding protein psRNATarget
XM_008664645.2
ncRNA:24   AGGUGGUGGUCAAGUUAUUAGAAA   1
  ||||||||*||*||||||||||||
targets:298   UCCACCACAAGCUCAAUAAUCUUU   321

2.5 PREDICTED: Zea mays O-methyltransferase MdmC (LOC103641291), transcript variant X5, mRNA NA coding protein psRNATarget
XM_008664644.2
ncRNA:24   AGGUGGUGGUCAAGUUAUUAGAAA   1
  ||||||||*||*||||||||||||
targets:298   UCCACCACAAGCUCAAUAAUCUUU   321

2.5 PREDICTED: Zea mays O-methyltransferase MdmC (LOC103641291), transcript variant X2, mRNA NA coding protein psRNATarget
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