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BaseInfo

ncRNA ID	novel_zma_miR13898
Species	Zea mays
Class	miRNA
Genome position	Chr4:222275037-222275116 [+]
Reference genome	RefGen_v4
Source	SRR2089698
Length	24
Mature sequence(if miRNA)	57 - GGAUUGAAGGGGAUUGAAGAAGAA - 80
Stem-loop(if miRNA)	--CCC  C                       CUA      A      CU CAAUCCCCUUCAAUCCCGAAGGG   GUUUGG A      || |||||||||||||||||||||||   ||||||      GA GUUAGGGGAAGUUAGGGCUUCCC   UAAACU A AAGAA  A                       --C      C
Stem-loop sequence	CCCCUCCAAUCCCCUUCAAUCCCGAAGGGCUAGUUUGGAAACUCAAAUCCCCUUCGGGAUUGAAGGGGAUUGAAGAAGAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ069159.1	ncRNA:24   AAGAAGAAGUUAGGGGAAGUUAGG   1   |||*|||*|||||||||||||||| targets:57   UUCCUCUCCAAUCCCCUUCAAUCC   80 Target Full Sequence	1.0	TSA: Zea mays contig04794, mRNA sequence	NA	coding protein	psRNATarget
LQ235121.1	ncRNA:24   AAGAAGAAGUUAGGGGAAGUUAGG   1   *|||*|*||||||||||||||||| targets:83   AUCUCCCUCAAUCCCCUUCAAUCC   106 Target Full Sequence	1.0	Sequence 1116 from Patent EP2985353	NA	coding protein	psRNATarget
JB163452.1	ncRNA:24   AAGAAGAAGUUAGGGGAAGUUAGG   1   *|||*|*||||||||||||||||| targets:83   AUCUCCCUCAAUCCCCUUCAAUCC   106 Target Full Sequence	1.0	Sequence 1116 from Patent EP2559767	NA	coding protein	psRNATarget
HI402991.1	ncRNA:24   AAGAAGAAGUUAGGGGAAGUUAGG   1   *|||*|*||||||||||||||||| targets:83   AUCUCCCUCAAUCCCCUUCAAUCC   106 Target Full Sequence	1.0	Sequence 1116 from Patent EP2074227	NA	coding protein	psRNATarget
NM_001196996.1	ncRNA:24   AAGAAGAAGUUAGGGGAAGUUAGG   1   **=||=|||||||||*|||||||| targets:379   AAUUUUUUCAAUCCCAUUCAAUCC   402 Target Full Sequence	2.5	Zea mays uncharacterized LOC100502518 (LOC100502518), mRNA	NA	coding protein	psRNATarget
BT088422.1	ncRNA:24   AAGAAGAAGUUAGGGGAAGUUAGG   1   **=||=|||||||||*|||||||| targets:379   AAUUUUUUCAAUCCCAUUCAAUCC   402 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0189N22 mRNA, complete cds	NA	coding protein	psRNATarget
BT042257.1	ncRNA:24   AAGAAGAAGUUAGGGGAAGUUAGG   1   ||||*|*|||=||||||||||||* targets:1497   UUCUCCCUCAGUCCCCUUCAAUCA   1520 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0181O20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001317055.1	ncRNA:24   AAGAAGAAGUUAGGGGAAGUUAGG   1   ||||*|*|||=||||||||||||* targets:1497   UUCUCCCUCAGUCCCCUUCAAUCA   1520 Target Full Sequence	3.0	Zea mays Membrane metalloprotease ARASP chloroplastic (LOC100274122), mRNA	NA	coding protein	psRNATarget
XM_008662014.2	ncRNA:24   AAGAAGAAGUUAGGGGAAGUUAGG   1   *|||*||*|=|||||||||||||| targets:1071   AUCUGCUCCGAUCCCCUUCAAUCC   1094 Target Full Sequence	2.0	PREDICTED: Zea mays CASP-like protein 4B1 (LOC103639253), mRNA	NA	coding protein	psRNATarget
EU967673.1	ncRNA:24   AAGAAGAAGUUAGGGGAAGUUAGG   1   *|||*||*|=|||||||||||||| targets:945   AUCUGCUCCGAUCCCCUUCAAUCC   968 Target Full Sequence	2.0	Zea mays clone 305238 mRNA sequence	NA	coding protein	psRNATarget
JB166405.1	ncRNA:24   AAGAAGAAGUUAGGGGAAGUUAGG   1   *|||*||*|||||||||||=|||| targets:90   AUCUCCUCCAAUCCCCUUCGAUCC   113 Target Full Sequence	2.5	Sequence 4069 from Patent EP2559767	NA	coding protein	psRNATarget
JB166408.1	ncRNA:24   AAGAAGAAGUUAGGGGAAGUUAGG   1   *|||*||*|||||||||||=|||| targets:90   AUCUCCUCCAAUCCCCUUCGAUCC   113 Target Full Sequence	2.5	Sequence 4072 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238077.1	ncRNA:24   AAGAAGAAGUUAGGGGAAGUUAGG   1   *|||*||*|||||||||||=|||| targets:90   AUCUCCUCCAAUCCCCUUCGAUCC   113 Target Full Sequence	2.5	Sequence 4072 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238074.1	ncRNA:24   AAGAAGAAGUUAGGGGAAGUUAGG   1   *|||*||*|||||||||||=|||| targets:90   AUCUCCUCCAAUCCCCUUCGAUCC   113 Target Full Sequence	2.5	Sequence 4069 from Patent EP2985353	NA	coding protein	psRNATarget
HI405944.1	ncRNA:24   AAGAAGAAGUUAGGGGAAGUUAGG   1   *|||*||*|||||||||||=|||| targets:90   AUCUCCUCCAAUCCCCUUCGAUCC   113 Target Full Sequence	2.5	Sequence 4069 from Patent EP2074227	NA	coding protein	psRNATarget
HI405947.1	ncRNA:24   AAGAAGAAGUUAGGGGAAGUUAGG   1   *|||*||*|||||||||||=|||| targets:90   AUCUCCUCCAAUCCCCUUCGAUCC   113 Target Full Sequence	2.5	Sequence 4072 from Patent EP2074227	NA	coding protein	psRNATarget
NM_001147738.1	ncRNA:24   AAGAAGAAGUUAGGGGAAGUUAGG   1   |||**|*|=||||||||||||||| targets:864   UUCCCCCUUAAUCCCCUUCAAUCC   887 Target Full Sequence	2.0	Zea mays putative glutathione peroxidase (LOC100273297), mRNA	NA	coding protein	psRNATarget
BT066291.1	ncRNA:24   AAGAAGAAGUUAGGGGAAGUUAGG   1   |||**|*|=||||||||||||||| targets:864   UUCCCCCUUAAUCCCCUUCAAUCC   887 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds	NA	coding protein	psRNATarget
BT040716.2	ncRNA:24   AAGAAGAAGUUAGGGGAAGUUAGG   1   |||**|*|=||||||||||||||| targets:859   UUCCCCCUUAAUCCCCUUCAAUCC   882 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds	NA	coding protein	psRNATarget
EU961132.1	ncRNA:24   AAGAAGAAGUUAGGGGAAGUUAGG   1   |||**|*|=||||||||||||||| targets:820   UUCCCCCUUAAUCCCCUUCAAUCC   843 Target Full Sequence	2.0	Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
JB170124.1	ncRNA:24   AAGAAGAAGUUAGGGGAAGUUAGG   1   |||**|*|=||||||||||||||| targets:66   UUCCCCCUUAAUCCCCUUCAAUCC   89 Target Full Sequence	2.0	Sequence 7788 from Patent EP2559767	NA	coding protein	psRNATarget
HI409663.1	ncRNA:24   AAGAAGAAGUUAGGGGAAGUUAGG   1   |||**|*|=||||||||||||||| targets:66   UUCCCCCUUAAUCCCCUUCAAUCC   89 Target Full Sequence	2.0	Sequence 7788 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241793.1	ncRNA:24   AAGAAGAAGUUAGGGGAAGUUAGG   1   |||**|*|=||||||||||||||| targets:66   UUCCCCCUUAAUCCCCUUCAAUCC   89 Target Full Sequence	2.0	Sequence 7788 from Patent EP2985353	NA	coding protein	psRNATarget