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BaseInfo

ncRNA ID novel_zma_miR13894
Species Zea mays
Class miRNA
Genome position Chr1:17092784-17092866 [-]
Reference genome RefGen_v4
Source SRR1997866
Length 22
Mature sequence(if miRNA) 1 - CCUUUGACCAAGCUGAUCACCC - 22
Stem-loop(if miRNA) --GA    U   C   -        -C   -------     C  A
    GGUC GCU GGU GAAGGUGG  GGC       GCCAG CU C
    |||| ||| ||| ||||||||  |||       ||||| ||
    CUAG CGA CCA UUUCCACU  CCG       UGGUC GA C
CCCA    U   A   G        AC   AACAGCC     A  U
Stem-loop sequence GAGGUCUGCUCGGUGAAGGUGGCGGCGCCAGCCUACCUAGACUGGUCCGACAAGCCCAUCACCUUUGACCAAGCUGAUCACCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008664734.2
ncRNA:22   CCCACUAGUCGAACCAGUUUCC   1
  *|||||*=|||||||||||||*
targets:3753   UGGUGACUAGCUUGGUCAAAGC   3774

3.0 PREDICTED: Zea mays uncharacterized LOC103641379 (LOC103641379), mRNA NA coding protein psRNATarget
XM_008647341.2
ncRNA:22   CCCACUAGUCGAACCAGUUUCC   1
  ***|*||||||||||||||||*
targets:624   AAAUAAUCAGCUUGGUCAAAGA   645

2.0 PREDICTED: Zea mays putative MYB DNA-binding domain superfamily protein (MYB167), transcript variant X1, mRNA NA coding protein psRNATarget