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BaseInfo

ncRNA ID	novel_zma_miR13885
Species	Zea mays
Class	miRNA
Genome position	Chr1:157518480-157518598 [-]
Reference genome	RefGen_v4
Source	SRR1997866
Length	24
Mature sequence(if miRNA)	96 - GAGCGCGCGCGGGCUGCUGCGGUG - 119
Stem-loop(if miRNA)	--G   G   -    G    -     UG   G     -U   GU  -U      -    C  G    AGC CGC GCGG CUGC UGCGG  GCC GCGGC  AGG  CU  UUGCCG AGCG GC C    ||| ||| |||| |||| |||||  ||| |||||  |||  ||  |||||| |||| ||    UCG GCG CGUC GGCG GCGUC  CGG UGCCG  UUU  GA  GGCGGC UCGU CG G UCG   -   U    G    C     GU   G     UU   UG  UC      G    -  G
Stem-loop sequence	GAGCGCGCGCGGGCUGCUGCGGUGGCCGGCGGCUAGGGUCUUUUGCCGAGCGCGCGCGGGCUGCUGCGGCGGCUAGGUUUUUUGCCGUGGGCUGCUGCGCGCGGGCUGCUGCGGCUGCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT086008.2	ncRNA:24   GUGGCGUCGUCGGGCGCGCGCGAG   1   ||*|||=||||||*|||||||||| targets:691   CAGCGCGGCAGCCAGCGCGCGCUC   714 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0097I01 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008649369.2	ncRNA:24   GUGGCGUCGUCGGGCGCGCGCGAG   1   |=|||||||*||||||||||*||| targets:510   CGCCGCAGCCGCCCGCGCGCUCUC   533 Target Full Sequence	2.5	PREDICTED: Zea mays O-sialoglycoprotein endopeptidase (LOC100273984), transcript variant X7, mRNA	NA	coding protein	psRNATarget
NM_001148370.1	ncRNA:24   GUGGCGUCGUCGGGCGCGCGCGAG   1   |=|||||||*||||||||||*||| targets:338   CGCCGCAGCCGCCCGCGCGCUCUC   361 Target Full Sequence	2.5	Zea mays O-sialoglycoprotein endopeptidase (LOC100273984), mRNA	NA	coding protein	psRNATarget
BT042149.1	ncRNA:24   GUGGCGUCGUCGGGCGCGCGCGAG   1   |=|||||||*||||||||||*||| targets:338   CGCCGCAGCCGCCCGCGCGCUCUC   361 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0146I19 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008649365.2	ncRNA:24   GUGGCGUCGUCGGGCGCGCGCGAG   1   |=|||||||*||||||||||*||| targets:509   CGCCGCAGCCGCCCGCGCGCUCUC   532 Target Full Sequence	2.5	PREDICTED: Zea mays O-sialoglycoprotein endopeptidase (LOC100273984), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008649367.2	ncRNA:24   GUGGCGUCGUCGGGCGCGCGCGAG   1   |=|||||||*||||||||||*||| targets:510   CGCCGCAGCCGCCCGCGCGCUCUC   533 Target Full Sequence	2.5	PREDICTED: Zea mays O-sialoglycoprotein endopeptidase (LOC100273984), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_008649366.2	ncRNA:24   GUGGCGUCGUCGGGCGCGCGCGAG   1   |=|||||||*||||||||||*||| targets:510   CGCCGCAGCCGCCCGCGCGCUCUC   533 Target Full Sequence	2.5	PREDICTED: Zea mays O-sialoglycoprotein endopeptidase (LOC100273984), transcript variant X5, mRNA	NA	coding protein	psRNATarget
EZ072664.1	ncRNA:24   GUGGCGUCGUCGGGCGCGCGCGAG   1   |=|*|||||||||*|||||||||* targets:8   CGCAGCAGCAGCCGGCGCGCGCUG   31 Target Full Sequence	2.5	TSA: Zea mays contig08301, mRNA sequence	NA	coding protein	psRNATarget
XM_008659746.2	ncRNA:24   GUGGCGUCGUCGGGCGCGC-GCGAG   1   ****|||||||||||||||-||||| targets:601   GCAAGCAGCAGCCCGCGCGGCGCUC   625 Target Full Sequence	3.0	PREDICTED: Zea mays protein IQ-DOMAIN 14 (LOC103637588), mRNA	NA	coding protein	psRNATarget
XM_008658143.2	ncRNA:24   GUGG-CGUCGUCGGGCGCGCGCGAG   1   ||=|-||=|||*||||||||||||* targets:991   CAUCAGCGGCAACCCGCGCGCGCUG   1015 Target Full Sequence	3.0	PREDICTED: Zea mays probable mediator of RNA polymerase II transcription subunit 37c (LOC103635762), mRNA	NA	coding protein	psRNATarget