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BaseInfo

ncRNA ID	novel_zma_miR13859
Species	Zea mays
Class	miRNA
Genome position	Chr1:296612879-296612969 [-]
Reference genome	RefGen_v4
Source	SRR1997866
Length	24
Mature sequence(if miRNA)	1 - AGUGGCACACAAGGAACGAGUAUA - 24
Stem-loop(if miRNA)	--    UA                  G AG     -AA      UU   UACU  UUCUUUGUGUGCCACUGA U  CAUAU   GUACAU  U   ||||  |||||||||||||||||| |  |||||   ||||||  U   AUGA  AAGGAACACACGGUGACU G  GUGUA   UAUGUG  U AU    GC                  G -G     CAA      UG
Stem-loop sequence	UACUUAUUCUUUGUGUGCCACUGAGUAGCAUAUAAGUACAUUUUUUGUGUGUAUAACAUGUGGGGUCAGUGGCACACAAGGAACGAGUAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001147730.1	ncRNA:24   AUAUGAGCAAGGAACACACGGUGA   1   |||||||||||||||||||||||| targets:635   UAUACUCGUUCCUUGUGUGCCACU   658 Target Full Sequence	0.0	Zea mays Vacuolar protein sorting-associated protein 24 homolog 1 (umc2748), mRNA	NA	coding protein	psRNATarget
BT040698.1	ncRNA:24   AUAUGAGCAAGGAACACACGGUGA   1   |||||||||||||||||||||||| targets:635   UAUACUCGUUCCUUGUGUGCCACU   658 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0119B19 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020547541.1	ncRNA:24   AUAUGAGCAAGGAACACACGGUGA   1   |||||||||||||||||||||||| targets:4234   UAUACUCGUUCCUUGUGUGCCACU   4257 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100273682 (LOC100273682), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU967272.1	ncRNA:24   AUAUGAGCAAGGAACACACGGUGA   1   |||||||*|||||||||||||||| targets:536   UAUACUCAUUCCUUGUGUGCCACU   559 Target Full Sequence	1.0	Zea mays clone 300934 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU949300.1	ncRNA:24   AUAUGAGCAAGGAACACACGGUGA   1   |||||||*|||||||||||||||| targets:119   UAUACUCAUUCCUUGUGUGCCACU   142 Target Full Sequence	1.0	Zea mays clone 400899 mRNA sequence	NA	coding protein	psRNATarget
EZ080420.1	ncRNA:24   AUAUGAGCAAGGAACACACGGUGA   1   ||||*||*|||||||||||||||| targets:57   UAUAGUCAUUCCUUGUGUGCCACU   80 Target Full Sequence	1.0	TSA: Zea mays contig16059, mRNA sequence	NA	coding protein	psRNATarget
EU942982.1	ncRNA:24   AUAUGAGCAAGGAACACACGGUGA   1   |||||||*|*|||||||||||||| targets:31   UAUACUCAUCCCUUGUGUGCCACU   54 Target Full Sequence	2.0	Zea mays clone 1548806 mRNA sequence	NA	coding protein	psRNATarget
BT036355.1	ncRNA:24   AUAUGAGCAAGGAACACACGGUGA   1   |||||||*|*|||||||||||||| targets:950   UAUACUCAUCCCUUGUGUGCCACU   973 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0108G21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008655872.2	ncRNA:24   AUAUGAGCAAGGAACACACGGUGA   1   |||||||*||||||||*||||||| targets:1108   UAUACUCAUUCCUUGUAUGCCACU   1131 Target Full Sequence	2.5	PREDICTED: Zea mays glutathione S-transferase T3-like (LOC103634314), mRNA	NA	coding protein	psRNATarget
HI406837.1	ncRNA:24   AUAUGAGCAAGGAACACACGGUGA   1   |=|||||*||*||||||||||||| targets:6   UGUACUCAUUACUUGUGUGCCACU   29 Target Full Sequence	2.0	Sequence 4962 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238967.1	ncRNA:24   AUAUGAGCAAGGAACACACGGUGA   1   |=|||||*||*||||||||||||| targets:6   UGUACUCAUUACUUGUGUGCCACU   29 Target Full Sequence	2.0	Sequence 4962 from Patent EP2985353	NA	coding protein	psRNATarget
JB167298.1	ncRNA:24   AUAUGAGCAAGGAACACACGGUGA   1   |=|||||*||*||||||||||||| targets:6   UGUACUCAUUACUUGUGUGCCACU   29 Target Full Sequence	2.0	Sequence 4962 from Patent EP2559767	NA	coding protein	psRNATarget