Search result

BaseInfo

ncRNA ID	novel_zma_miR13848
Species	Zea mays
Class	miRNA
Genome position	Chr1:221967494-221967574 [+]
Reference genome	RefGen_v4
Source	SRR1997866
Length	24
Mature sequence(if miRNA)	1 - ACUAUGUGUAGAAACCUAGCCGGC - 24
Stem-loop(if miRNA)	--                               U   A  A   ACUAUGUGUAGAAACCUAGCCGGCCUUCAUA GAA UU U   ||||||||||||||||||||||||||||||| ||| ||   UGAUACACAUCUUUGGAUCGGCCGGAGGUAU CUU AA A CG                               -   C  A
Stem-loop sequence	ACUAUGUGUAGAAACCUAGCCGGCCUUCAUAUGAAAUUAUAAAACUUCUAUGGAGGCCGGCUAGGUUUCUACACAUAGUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403209.1	ncRNA:24   CGGCCGAUCCAAAGAUGUGUAUCA   1   *=|**||||||||||||||||||| targets:143   UUCUCCUAGGUUUCUACACAUAGU   166 Target Full Sequence	0.0	Sequence 1334 from Patent EP2074227	NA	coding protein	psRNATarget
JB163670.1	ncRNA:24   CGGCCGAUCCAAAGAUGUGUAUCA   1   *=|**||||||||||||||||||| targets:143   UUCUCCUAGGUUUCUACACAUAGU   166 Target Full Sequence	0.0	Sequence 1334 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235339.1	ncRNA:24   CGGCCGAUCCAAAGAUGUGUAUCA   1   *=|**||||||||||||||||||| targets:143   UUCUCCUAGGUUUCUACACAUAGU   166 Target Full Sequence	0.0	Sequence 1334 from Patent EP2985353	NA	coding protein	psRNATarget
LQ242225.1	ncRNA:24   CGGCCGAUCCAAAGAUGUGUAUCA   1   *=|**=|||||||||||||||||| targets:66   UUCUCUUAGGUUUCUACACAUAGU   89 Target Full Sequence	1.0	Sequence 8220 from Patent EP2985353	NA	coding protein	psRNATarget
JB170556.1	ncRNA:24   CGGCCGAUCCAAAGAUGUGUAUCA   1   *=|**=|||||||||||||||||| targets:66   UUCUCUUAGGUUUCUACACAUAGU   89 Target Full Sequence	1.0	Sequence 8220 from Patent EP2559767	NA	coding protein	psRNATarget
HI410095.1	ncRNA:24   CGGCCGAUCCAAAGAUGUGUAUCA   1   *=|**=|||||||||||||||||| targets:66   UUCUCUUAGGUUUCUACACAUAGU   89 Target Full Sequence	1.0	Sequence 8220 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235098.1	ncRNA:24   CGGCCGAUCCAAAGAUGUGUAUCA   1   *=|**=|||||||||||||||||| targets:69   UUCUCUUAGGUUUCUACACAUAGU   92 Target Full Sequence	1.0	Sequence 1093 from Patent EP2985353	NA	coding protein	psRNATarget
HI402968.1	ncRNA:24   CGGCCGAUCCAAAGAUGUGUAUCA   1   *=|**=|||||||||||||||||| targets:69   UUCUCUUAGGUUUCUACACAUAGU   92 Target Full Sequence	1.0	Sequence 1093 from Patent EP2074227	NA	coding protein	psRNATarget
JB163429.1	ncRNA:24   CGGCCGAUCCAAAGAUGUGUAUCA   1   *=|**=|||||||||||||||||| targets:69   UUCUCUUAGGUUUCUACACAUAGU   92 Target Full Sequence	1.0	Sequence 1093 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235352.1	ncRNA:24   CGGCCGAUCCAAAGAUGUGUAUCA   1   *==**=|||||||||||||||||| targets:137   UUUUCUUAGGUUUCUACACAUAGU   160 Target Full Sequence	1.0	Sequence 1347 from Patent EP2985353	NA	coding protein	psRNATarget
HI403222.1	ncRNA:24   CGGCCGAUCCAAAGAUGUGUAUCA   1   *==**=|||||||||||||||||| targets:137   UUUUCUUAGGUUUCUACACAUAGU   160 Target Full Sequence	1.0	Sequence 1347 from Patent EP2074227	NA	coding protein	psRNATarget
JB163683.1	ncRNA:24   CGGCCGAUCCAAAGAUGUGUAUCA   1   *==**=|||||||||||||||||| targets:137   UUUUCUUAGGUUUCUACACAUAGU   160 Target Full Sequence	1.0	Sequence 1347 from Patent EP2559767	NA	coding protein	psRNATarget
JB163667.1	ncRNA:24   CGGCCGAUCCAAAGAUGUGUAUCA   1   *||--=|||||||*|||||||||| targets:68   CCC--UUAGGUUUGUACACAUAGU   89 Target Full Sequence	2.5	Sequence 1331 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235336.1	ncRNA:24   CGGCCGAUCCAAAGAUGUGUAUCA   1   *||--=|||||||*|||||||||| targets:68   CCC--UUAGGUUUGUACACAUAGU   89 Target Full Sequence	2.5	Sequence 1331 from Patent EP2985353	NA	coding protein	psRNATarget
HI403206.1	ncRNA:24   CGGCCGAUCCAAAGAUGUGUAUCA   1   *||--=|||||||*|||||||||| targets:68   CCC--UUAGGUUUGUACACAUAGU   89 Target Full Sequence	2.5	Sequence 1331 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235350.1	ncRNA:24   CGGCCGAUCCAAAGAUGUGUAUCA   1   *=|**=||*||||||||||||||| targets:137   UUCUCUUAAGUUUCUACACAUAGU   160 Target Full Sequence	2.0	Sequence 1345 from Patent EP2985353	NA	coding protein	psRNATarget
HI403220.1	ncRNA:24   CGGCCGAUCCAAAGAUGUGUAUCA   1   *=|**=||*||||||||||||||| targets:137   UUCUCUUAAGUUUCUACACAUAGU   160 Target Full Sequence	2.0	Sequence 1345 from Patent EP2074227	NA	coding protein	psRNATarget
JB163681.1	ncRNA:24   CGGCCGAUCCAAAGAUGUGUAUCA   1   *=|**=||*||||||||||||||| targets:137   UUCUCUUAAGUUUCUACACAUAGU   160 Target Full Sequence	2.0	Sequence 1345 from Patent EP2559767	NA	coding protein	psRNATarget