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BaseInfo

ncRNA ID	novel_zma_miR13842
Species	Zea mays
Class	miRNA
Genome position	Chr1:173705427-173705490 [+]
Reference genome	RefGen_v4
Source	SRR1997866;SRR2089703
Length	23
Mature sequence(if miRNA)	42 - CCGCGCCUGUGGGCCGGACGGUU - 64
Stem-loop(if miRNA)	-- G         UG    -     G     C   C GUCCGGCCC  AGGC CGGAC GUCCG G   | |||||||||  |||| ||||| ||||| G   G CAGGCCGGG  UCCG GCCUG CAGGC U UU G         UG    C     A     C
Stem-loop sequence	CGGUCCGGCCCUGAGGCCGGACGGUCCGCGGUCCGGACAGUCCGCGCCUGUGGGCCGGACGGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ059430.1	ncRNA:23   UUGGCAGGCCGGGUGUCCGCGCC   1   =|||||||||||||||||||||| targets:30   GACCGUCCGGCCCACAGGCGCGG   52 Target Full Sequence	0.0	TSA: Zea mays contig60552, mRNA sequence	NA	coding protein	psRNATarget
EU940813.1	ncRNA:23   UUGGCAGGCCGGGUGUCCGCGCC   1   =|||||||||||||||||||||| targets:43   GACCGUCCGGCCCACAGGCGCGG   65 Target Full Sequence	0.0	Zea mays clone 1145688 mRNA sequence	NA	coding protein	psRNATarget
BT034345.1	ncRNA:23   UUGGCAGGCCGGGUGUCCGCGCC   1   =*||||||||||||||||||||| targets:734   GUCCGUCCGGCCCACAGGCGCGG   756 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0009F02 mRNA, complete cds	NA	coding protein	psRNATarget
EZ061701.1	ncRNA:23   UUGGCAGGCCGGGUGUCCGCGCC   1   =||||||||||||||||||*||| targets:183   GACCGUCCGGCCCACAGGCACGG   205 Target Full Sequence	1.5	TSA: Zea mays contig62823, mRNA sequence	NA	coding protein	psRNATarget
EU947258.1	ncRNA:23   UU--GGCAGGCCGGGUGUCCGCGCC   1   ||--=||||||*|||||||||||*| targets:597   AAGUUCGUCCGUCCCACAGGCGCUG   621 Target Full Sequence	2.5	Zea mays clone 335065 mRNA sequence	NA	coding protein	psRNATarget
BT034171.1	ncRNA:23   UU--GGCAGGCCGGGUGUCCGCGCC   1   ||--=||||||*|||||||||||*| targets:571   AAGUUCGUCCGUCCCACAGGCGCUG   595 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0033A05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137341.1	ncRNA:23   UU--GGCAGGCCGGGUGUCCGCGCC   1   ||--=||||||*|||||||||||*| targets:571   AAGUUCGUCCGUCCCACAGGCGCUG   595 Target Full Sequence	2.5	Zea mays UDP-glycosyltransferase 72B1 (LOC100191917), mRNA	NA	coding protein	psRNATarget
NM_001143576.1	ncRNA:23   UU--GGCAGGCCGGGUGUCCGCGCC   1   ||--=||||||*|||||||||||*| targets:618   AAGUUCGUCCGUCCCACAGGCGCUG   642 Target Full Sequence	2.5	Zea mays UDP-glycosyltransferase 72B1 (LOC100217220), mRNA	NA	coding protein	psRNATarget
BT038151.1	ncRNA:23   UU--GGCAGGCCGGGUGUCCGCGCC   1   ||--=||||||*|||||||||||*| targets:618   AAGUUCGUCCGUCCCACAGGCGCUG   642 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0214K01 mRNA, complete cds	NA	coding protein	psRNATarget