Search result

BaseInfo

ncRNA ID novel_zma_miR13838
Species Zea mays
Class miRNA
Genome position Chr9:45697625-45697705 [+]
Reference genome RefGen_v4
Source SRR1997866
Length 24
Mature sequence(if miRNA) 58 - AGGCUUAUUUUCGGCGGUUUCUGG - 81
Stem-loop(if miRNA) --       A           G   -UU     C       
  AGAAGCC CCGAAAAUAAG CCU   GCUGC GAAAAUAA
  ||||||| ||||||||||| |||   ||||| |||||||G
  UCUUUGG GGCUUUUAUUC GGA   CGGCG CUUUUAUC
GG       C           -   UUU     A       
Stem-loop sequence AGAAGCCACCGAAAAUAAGGCCUUUGCUGCCGAAAAUAAGCUAUUUUCAGCGGCUUUAGGCUUAUUUUCGGCGGUUUCUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008652299.2
ncRNA:24   GGUCUUUGGCGGCUUUUAUUCGGA   1
  |||*||*|||=|||||||||||||
targets:1071   CCAUAAUCCGUCGAAAAUAAGCCU   1094

2.0 PREDICTED: Zea mays putative bZIP transcription factor superfamily protein (LOC103631376), mRNA NA coding protein psRNATarget