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BaseInfo

ncRNA ID	novel_zma_miR13824
Species	Zea mays
Class	miRNA
Genome position	Chr9:81445432-81445542 [-]
Reference genome	RefGen_v4
Source	SRR1997866
Length	24
Mature sequence(if miRNA)	88 - GAUUUGGUGACAAAGGGAUCCCGG - 111
Stem-loop(if miRNA)	--           AAA                  C                   AA   GAUUUGGUGAC   GGGAUCCCGGGAGGAUUG AGGGGAUUGAGGGGGAAAU  A   |||||||||||   |||||||||||||||||| |||||||||||||||||||   CUAAACCACUG   CCCUAGGGCCCUCCUAAC UCCCCUAACUCCCCCUUUA  C GA           -GG                  C                   AU
Stem-loop sequence	GAUUUGGUGACAAAGGGAUCCCGGGAGGAUUGCAGGGGAUUGAGGGGGAAAUAAACUAAUUUCCCCCUCAAUCCCCUCCAAUCCUCCCGGGAUCCCGGGUCACCAAAUCAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI409663.1	ncRNA:24   GGCCCUAGGGAAACAGUGGUUUAG   1   ||||||||||*||||||||||||| targets:92   CCGGGAUCCCCUUGUCACCAAAUC   115 Target Full Sequence	1.0	Sequence 7788 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241793.1	ncRNA:24   GGCCCUAGGGAAACAGUGGUUUAG   1   ||||||||||*||||||||||||| targets:92   CCGGGAUCCCCUUGUCACCAAAUC   115 Target Full Sequence	1.0	Sequence 7788 from Patent EP2985353	NA	coding protein	psRNATarget
JB170124.1	ncRNA:24   GGCCCUAGGGAAACAGUGGUUUAG   1   ||||||||||*||||||||||||| targets:92   CCGGGAUCCCCUUGUCACCAAAUC   115 Target Full Sequence	1.0	Sequence 7788 from Patent EP2559767	NA	coding protein	psRNATarget
EU961132.1	ncRNA:24   GGCCCUAGGGAAACAGUGGUUUAG   1   ||||||||||*||||||||||||| targets:846   CCGGGAUCCCCUUGUCACCAAAUC   869 Target Full Sequence	1.0	Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
BT040716.2	ncRNA:24   GGCCCUAGGGAAACAGUGGUUUAG   1   ||||||||||*||||||||||||| targets:885   CCGGGAUCCCCUUGUCACCAAAUC   908 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds	NA	coding protein	psRNATarget
BT066291.1	ncRNA:24   GGCCCUAGGGAAACAGUGGUUUAG   1   ||||||||||*||||||||||||| targets:890   CCGGGAUCCCCUUGUCACCAAAUC   913 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147738.1	ncRNA:24   GGCCCUAGGGAAACAGUGGUUUAG   1   ||||||||||*||||||||||||| targets:890   CCGGGAUCCCCUUGUCACCAAAUC   913 Target Full Sequence	1.0	Zea mays putative glutathione peroxidase (LOC100273297), mRNA	NA	coding protein	psRNATarget
EU953234.1	ncRNA:24   GGCCCUAGGGAAACAGUGGUUUAG   1   ||||||||||*||||||||||||| targets:1495   CCGGGAUCCCCUUGUCACCAAAUC   1518 Target Full Sequence	1.0	Zea mays clone 1392496 mRNA sequence	NA	coding protein	psRNATarget
EZ098881.1	ncRNA:24   GGCCCUAGGGAAACAGUGGUUUAG   1   =|||||||||*||||||||||||| targets:102   UCGGGAUCCCCUUGUCACCAAAUC   125 Target Full Sequence	1.0	TSA: Zea mays contig34536, mRNA sequence	NA	coding protein	psRNATarget
EU973567.1	ncRNA:24   GGCCCUAGGGAAACAGUGGUUUAG   1   *|||||||||*||||||||||||| targets:110   ACGGGAUCCCCUUGUCACCAAAUC   133 Target Full Sequence	1.0	Zea mays clone 401029 mRNA sequence	NA	coding protein	psRNATarget
EZ106816.1	ncRNA:24   GGCCCUAGGGAAACAGUGGUUUAG   1   |||*||||||*||||||||||||| targets:296   CCGUGAUCCCCUUGUCACCAAAUC   319 Target Full Sequence	1.0	TSA: Zea mays contig42474, mRNA sequence	NA	coding protein	psRNATarget
XM_008649581.2	ncRNA:24   GGCCCUAGGGAAACAGUGGUUUAG   1   |||*||||||*|||||=||||||| targets:1823   CCGUGAUCCCCUUGUCGCCAAAUC   1846 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat protein (LOC100527940), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU945995.1	ncRNA:24   GGCCCUAGGGAAACAGUGGUUUAG   1   |||*||||||*||||||||||||* targets:399   CCGUGAUCCCCUUGUCACCAAAUG   422 Target Full Sequence	2.0	Zea mays clone 293035 mRNA sequence	NA	coding protein	psRNATarget
XM_020539542.1	ncRNA:24   GGCCCUAGGGAAACAGUGGUUUAG   1   |||*|||||**||||||||||||| targets:156   CCGUGAUCCACUUGUCACCAAAUC   179 Target Full Sequence	2.0	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008651348.2	ncRNA:24   GGCCCUAGGGAAACAGUGGUUUAG   1   |||*|||||**||||||||||||| targets:156   CCGUGAUCCACUUGUCACCAAAUC   179 Target Full Sequence	2.0	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020539541.1	ncRNA:24   GGCCCUAGGGAAACAGUGGUUUAG   1   |||*|||||**||||||||||||| targets:156   CCGUGAUCCACUUGUCACCAAAUC   179 Target Full Sequence	2.0	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X6, mRNA	NA	coding protein	psRNATarget
EU972859.1	ncRNA:24   GGCCCUAGGGAAACAGUGGUUUAG   1   ******|||||||||||||||||| targets:3   AACUCUUCCCUUUGUCACCAAAUC   26 Target Full Sequence	1.0	Zea mays clone 389166 ATP binding protein mRNA, complete cds	NA	coding protein	psRNATarget