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BaseInfo

ncRNA ID	novel_zma_miR13813
Species	Zea mays
Class	miRNA
Genome position	Chr10:111877355-111877405 [+]
Reference genome	RefGen_v4
Source	SRR1997866
Length	24
Mature sequence(if miRNA)	1 - AGGUGCAUCGGACUGUCCGGUGGU - 24
Stem-loop(if miRNA)	--A            --             GGUGCAUCGGAC  UGUCCGGUGG    ||||||||||||  |||||||||U    CCGCGUAGCCUG  ACAGGCCACG ACA            UG
Stem-loop sequence	AGGUGCAUCGGACUGUCCGGUGGUGCACCGGACAGUGUCCGAUGCGCCACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB169901.1	ncRNA:24   UGGUGGCCUGUCAGGCUACGUGGA   1   ||||||||||||||||=||||||* targets:36   ACCACCGGACAGUCCGGUGCACCC   59 Target Full Sequence	2.5	Sequence 7565 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241570.1	ncRNA:24   UGGUGGCCUGUCAGGCUACGUGGA   1   ||||||||||||||||=||||||* targets:36   ACCACCGGACAGUCCGGUGCACCC   59 Target Full Sequence	2.5	Sequence 7565 from Patent EP2985353	NA	coding protein	psRNATarget
HI409440.1	ncRNA:24   UGGUGGCCUGUCAGGCUACGUGGA   1   ||||||||||||||||=||||||* targets:36   ACCACCGGACAGUCCGGUGCACCC   59 Target Full Sequence	2.5	Sequence 7565 from Patent EP2074227	NA	coding protein	psRNATarget
BT038885.1	ncRNA:24   UGGUGGCCUGUCAGGCUACGUGGA   1   =|||||||||||||||=||||||* targets:1033   GCCACCGGACAGUCCGGUGCACCG   1056 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0337O17 mRNA, complete cds	NA	coding protein	psRNATarget
EU968231.1	ncRNA:24   UGGUGGCCUGUCAGGCUACGUGGA   1   =|||||||||||||||=||||||* targets:1404   GCCACCGGACAGUCCGGUGCACCG   1427 Target Full Sequence	2.5	Zea mays clone 317172 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001349964.1	ncRNA:24   UGGUGGCCUGUCAGGCUACGUGGA   1   =|||||||||||||||=||||||* targets:2998   GCCACCGGACAGUCCGGUGCACCC   3021 Target Full Sequence	2.5	Zea mays uncharacterized LOC100278112 (IDP592), mRNA	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   UGGUGGCCUGUCAGGCUACGUGGA   1   ||||||||||||||||||||*||* targets:822   ACCACCGGACAGUCCGAUGCUCCC   845 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   UGGUGGCCUGUCAGGCUACGUGGA   1   ||||||||||||||||||||*||* targets:822   ACCACCGGACAGUCCGAUGCUCCC   845 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT066461.2	ncRNA:24   UGGUGGCCUGUCAGGCUACGUGGA   1   *=||||||||||||||=||||||* targets:711   CUCACCGGACAGUCCGGUGCACCA   734 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds	NA	coding protein	psRNATarget
BT068871.2	ncRNA:24   UGGUGGCCUGUCAGGCUACGUGGA   1   *=||||||||||||||=||||||* targets:693   CUCACCGGACAGUCCGGUGCACCA   716 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0146G02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176621.1	ncRNA:24   UGGUGGCCUGUCAGGCUACGUGGA   1   *=||||||||||||||=||||||* targets:693   CUCACCGGACAGUCCGGUGCACCA   716 Target Full Sequence	2.5	Zea mays uncharacterized LOC100384010 (LOC100384010), mRNA	NA	coding protein	psRNATarget
HI410113.1	ncRNA:24   UGGUGGCCUGUCAGGCUACGUGGA   1   **||||||||||||||=||||||* targets:153   UGCACCGGACAGUCCGGUGCACCA   176 Target Full Sequence	2.5	Sequence 8238 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242243.1	ncRNA:24   UGGUGGCCUGUCAGGCUACGUGGA   1   **||||||||||||||=||||||* targets:153   UGCACCGGACAGUCCGGUGCACCA   176 Target Full Sequence	2.5	Sequence 8238 from Patent EP2985353	NA	coding protein	psRNATarget
JB170574.1	ncRNA:24   UGGUGGCCUGUCAGGCUACGUGGA   1   **||||||||||||||=||||||* targets:153   UGCACCGGACAGUCCGGUGCACCA   176 Target Full Sequence	2.5	Sequence 8238 from Patent EP2559767	NA	coding protein	psRNATarget
EU950973.1	ncRNA:24   UGGUGGCCUGUCAGGCUACGUGGA   1   **||||||||||||||=||||||* targets:187   UGCACCGGACAGUCCGGUGCACCC   210 Target Full Sequence	2.5	Zea mays clone 677173 mRNA sequence	NA	coding protein	psRNATarget
BT065201.2	ncRNA:24   UGGUGGCCUGUCAGGCUACGUGGA   1   **||||||||||||||=||||||* targets:590   UGCACCGGACAGUCCGGUGCACCA   613 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
BT061123.2	ncRNA:24   UGGUGGCCUGUCAGGCUACGUGGA   1   **||||||||||||||=||||||* targets:142   UGCACCGGACAGUCCGGUGCACCA   165 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds	NA	coding protein	psRNATarget
BT016820.1	ncRNA:24   UG-GUGGCCUGUCAGGCUACGUGGA   1   ||-||||*|||*||||||||||||| targets:33   ACACACCAGACUGUCCGAUGCACCU   57 Target Full Sequence	2.0	Zea mays clone Contig653 mRNA sequence	NA	coding protein	psRNATarget