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BaseInfo

ncRNA ID	novel_zma_miR13808
Species	Zea mays
Class	miRNA
Genome position	Chr8:48357723-48357824 [+]
Reference genome	RefGen_v4
Source	SRR1997866
Length	24
Mature sequence(if miRNA)	79 - CUGAGGAACCAGGCUCGGCUCGGC - 102
Stem-loop(if miRNA)	--U         UC  CUCG          GUGU   -    U   U  -   A    GAGCCGAGC  GG    UCUCAGCUCG    AGC UCGA GCC GA CCG G    |||||||||  ||    ||||||||||    ||| |||| ||| || |||    CUCGGCUCG  CC    GGAGUCGAGC    UCG GGCU CGG CU GGC C CGG         GA  --AA          ACUU   U    -   -  C   U
Stem-loop sequence	UGAGCCGAGCUCGGCUCGUCUCAGCUCGGUGUAGCUCGAUGCCUGACCGAGCUCGGCUCGGCUCGGUGCUUUCACGAGCUGAGGAACCAGGCUCGGCUCGGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001323066.1	ncRNA:24   CGGCUCGGCUCGGACCAAGGAGUC   1   |||*||*||||||||||||||||* targets:1220   GCCAAGACGAGCCUGGUUCCUCAA   1243 Target Full Sequence	2.0	Zea mays armadillo repeat only 1 (LOC100381961), mRNA	NA	coding protein	psRNATarget
BT053830.1	ncRNA:24   CGG------CUCGGCUCGGACCAAGGAGUC   1   |||------|=|||**|||||||||||||| targets:734   GCCUCCUCGGGGCCAUGCCUGGUUCCUCAG   763 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0214H18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152240.1	ncRNA:24   CGG------CUCGGCUCGGACCAAGGAGUC   1   |||------|=|||**|||||||||||||| targets:734   GCCUCCUCGGGGCCAUGCCUGGUUCCUCAG   763 Target Full Sequence	2.0	Zea mays RNA recognition motif (RRM)-containing protein (LOC100279216), mRNA	NA	coding protein	psRNATarget
XM_008656562.2	ncRNA:24   CGG------CUCGGCUCGGACCAAGGAGUC   1   |||------|=|||**|||||||||||||| targets:829   GCCUCCUCGGGGCCAUGCCUGGUUCCUCAG   858 Target Full Sequence	2.0	PREDICTED: Zea mays RNA recognition motif (RRM)-containing protein (LOC100279216), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008656561.2	ncRNA:24   CGG------CUCGGCUCGGACCAAGGAGUC   1   |||------|=|||**|||||||||||||| targets:838   GCCUCCUCGGGGCCAUGCCUGGUUCCUCAG   867 Target Full Sequence	2.0	PREDICTED: Zea mays RNA recognition motif (RRM)-containing protein (LOC100279216), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008656559.2	ncRNA:24   CGG------CUCGGCUCGGACCAAGGAGUC   1   |||------|=|||**|||||||||||||| targets:794   GCCUCCUCGGGGCCAUGCCUGGUUCCUCAG   823 Target Full Sequence	2.0	PREDICTED: Zea mays RNA recognition motif (RRM)-containing protein (LOC100279216), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020542054.1	ncRNA:24   CGG------CUCGGCUCGGACCAAGGAGUC   1   |||------|=|||**|||||||||||||| targets:829   GCCUCCUCGGGGCCAUGCCUGGUUCCUCAG   858 Target Full Sequence	2.0	PREDICTED: Zea mays RNA recognition motif (RRM)-containing protein (LOC100279216), transcript variant X4, mRNA	NA	coding protein	psRNATarget