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BaseInfo

ncRNA ID	novel_zma_miR13798
Species	Zea mays
Class	miRNA
Genome position	Chr8:124264353-124264563 [-]
Reference genome	RefGen_v4
Source	SRR1997866
Length	24
Mature sequence(if miRNA)	1 - AAAGCAUCAGUUUCAACGAUCGUC - 24
Stem-loop(if miRNA)	--CA                                                                                         --  C    -  AA     AUCGUUGAAACUGAUGCUUUAAGUAUAGUAGAGAAUUAGUAAUAAUAUGAUAAAUGAGUUUAUUCCACUAAAUUUAUGGAAUAGACUUA  AU CAUU CU  A     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||| ||     UAGCAACUUUGACUACGAAAUUCAUAUCAUCUCUUAAUCAUUAUUAUACUAUUUACUCAAAUAAGGUGAUUUAAAUACCUUAUCUGAAU  UA GUAG GG  U CUGC                                                                                         AU  C    U  AA
Stem-loop sequence	CAAUCGUUGAAACUGAUGCUUUAAGUAUAGUAGAGAAUUAGUAAUAAUAUGAUAAAUGAGUUUAUUCCACUAAAUUUAUGGAAUAGACUUAAUCCAUUCUAAAUAAGGUGAUGCAUUAUAAGUCUAUUCCAUAAAUUUAGUGGAAUAAACUCAUUUAUCAUAUUAUUACUAAUUCUCUACUAUACUUAAAGCAUCAGUUUCAACGAUCGUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU949327.1	ncRNA:24   CUGCUAGCAACUUUGACUACGAAA   1   *||||||||||||||||||||||| targets:215   AACGAUCGUUGAAACUGAUGCUUU   238 Target Full Sequence	0.0	Zea mays clone 401177 mRNA sequence	NA	coding protein	psRNATarget
XM_020547954.1	ncRNA:24   CUGCUAGCAACUUUGACUACGAAA   1   |||||*||||||||||||||=||| targets:665   GACGACCGUUGAAACUGAUGUUUU   688 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100273810 (LOC100273810), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547953.1	ncRNA:24   CUGCUAGCAACUUUGACUACGAAA   1   |||||*||||||||||||||=||| targets:665   GACGACCGUUGAAACUGAUGUUUU   688 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100273810 (LOC100273810), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020550353.1	ncRNA:24   CUGCUAGCAACUUUGACUACGAAA   1   ||=||*|||||||||||=|||||| targets:906   GAUGACCGUUGAAACUGGUGCUUU   929 Target Full Sequence	2.5	PREDICTED: Zea mays transcription factor bHLH100-like (LOC103650720), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ075928.1	ncRNA:24   CUGC-------UAGCAACUUUGACUACGAAA   1   ||||-------|||||||||||||=|||||| targets:26   GACGCGGAACUAUCGUUGAAACUGGUGCUUU   56 Target Full Sequence	1.5	TSA: Zea mays contig11565, mRNA sequence	NA	coding protein	psRNATarget
XM_020552698.1	ncRNA:24   CUGCUAGCAACUUUGACUACGAAA   1   *||||*|||||||||||=|||||| targets:142   UACGACCGUUGAAACUGGUGCUUU   165 Target Full Sequence	2.5	PREDICTED: Zea mays signal peptide peptidase-like 4 (LOC103654100), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ076153.1	ncRNA:22   GCUAGCAACUUUGACUACGAAA   1   |||*|||||||||||||||||| targets:1   CGACCGUUGAAACUGAUGCUUU   22 Target Full Sequence	1.0	TSA: Zea mays contig11790, mRNA sequence	NA	coding protein	psRNATarget
EU940970.1	ncRNA:24   CUGCUAGCAACUUUGACUACGAAA   1   ||=||*|||||||||||*|||||| targets:1766   GAUGACCGUUGAAACUGUUGCUUU   1789 Target Full Sequence	2.5	Zea mays clone 1224747 mRNA sequence	NA	coding protein	psRNATarget
EU948976.1	ncRNA:24   CUGCUAGCAACUUUGACUACGAAA   1   ****=||||||||||||=|||||* targets:623   UUAAGUCGUUGAAACUGGUGCUUA   646 Target Full Sequence	2.5	Zea mays clone 392357 mRNA sequence	NA	coding protein	psRNATarget
EU945045.1	ncRNA:24   CUGCUAGCAACUUUGACUACGAAA   1   *||||*|*|*|||||||||||||| targets:472   AACGAACAUCGAAACUGAUGCUUU   495 Target Full Sequence	3.0	Zea mays clone 239103 mRNA sequence	NA	coding protein	psRNATarget