ncRNA ID | novel_zma_miR13776 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr7:73290936-73291153 [+] |
Reference genome | RefGen_v4 |
Source | SRR1997866 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AGAGGCGGUCGUAGGAAGUUAGCU - 24 |
Stem-loop(if miRNA) |
-AGA   -   CG                   C          GA   AG  GUA  -       A    U  --     UG     CAGC     -C           GA       GGC GGU  UAGGAAGUUAGCUGCCCAG UAACUUCCUA  GCC  UC   GC AAGUUAG UUUU GU  UUGAC  GUCAA    UGAAA  CUAACUUCCUA  GGA     ||| |||  ||||||||||||||||||| ||||||||||  |||  ||   || ||||||| |||| ||  |||||  |||||    |||||  |||||||||||  ||G     CCG CCG  AUCCUUCAAUCGAUGGGUC AUUGAAGGAU  CGG  GG   UG UUCAAUC AAAG CG  AACUG  CAGUU    ACUUU  GAUUGAAGGAU  CCG GAUA   A   AG                   A          GC   -A  AGA  C       C    U  AU     GU     ---U     UA           -G   |
Stem-loop sequence | AGAGGCGGUCGUAGGAAGUUAGCUGCCCAGCUAACUUCCUAGAGCCAGUCGUAGCAAGUUAGAUUUUUGUUUGACUGGUCAACAGCUGAAACCUAACUUCCUAGAGGAGGCCGUAGGAAGUUAGAUUUUCAUUUGACUGGUCAAUAGCUGAAACCUAACUUCGUAGAGGAGGCCGUAGGAAGUUAACUGGGUAGCUAACUUCCUAGAGCCAGCCAUAG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
BT086229.2 |
|
2.5 | Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
BT086229.2 |
|
1.5 | Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds | NA | coding protein | psRNATarget |