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BaseInfo

ncRNA ID novel_zma_miR13776
Species Zea mays
Class miRNA
Genome position Chr7:73290936-73291153 [+]
Reference genome RefGen_v4
Source SRR1997866
Length 24
Mature sequence(if miRNA) 1 - AGAGGCGGUCGUAGGAAGUUAGCU - 24
Stem-loop(if miRNA) -AGA   -   CG                   C          GA   AG  GUA  -       A    U  --     UG     CAGC     -C           GA  
    GGC GGU  UAGGAAGUUAGCUGCCCAG UAACUUCCUA  GCC  UC   GC AAGUUAG UUUU GU  UUGAC  GUCAA    UGAAA  CUAACUUCCUA  GGA
    ||| |||  ||||||||||||||||||| ||||||||||  |||  ||   || ||||||| |||| ||  |||||  |||||    |||||  |||||||||||  ||G
    CCG CCG  AUCCUUCAAUCGAUGGGUC AUUGAAGGAU  CGG  GG   UG UUCAAUC AAAG CG  AACUG  CAGUU    ACUUU  GAUUGAAGGAU  CCG
GAUA   A   AG                   A          GC   -A  AGA  C       C    U  AU     GU     ---U     UA           -G  
Stem-loop sequence AGAGGCGGUCGUAGGAAGUUAGCUGCCCAGCUAACUUCCUAGAGCCAGUCGUAGCAAGUUAGAUUUUUGUUUGACUGGUCAACAGCUGAAACCUAACUUCCUAGAGGAGGCCGUAGGAAGUUAGAUUUUCAUUUGACUGGUCAAUAGCUGAAACCUAACUUCGUAGAGGAGGCCGUAGGAAGUUAACUGGGUAGCUAACUUCCUAGAGCCAGCCAUAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT086229.2
ncRNA:24   UCGAUUGAAGGAUGCUGGCGGAGA   1
  *||||||||=|||||||||=||||
targets:1252   UGCUAACUUUCUACGACCGUCUCU   1275

2.5 Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds NA coding protein psRNATarget
BT086229.2
ncRNA:24   UCGAUUGAAGGAUGCUGGCGGAGA   1
  *||*||||||||||||||*|||||
targets:1170   UGCAAACUUCCUACGACCUCCUCU   1193

1.5 Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds NA coding protein psRNATarget