Search result

BaseInfo

ncRNA ID	novel_zma_miR13765
Species	Zea mays
Class	miRNA
Genome position	Chr6:53673471-53673689 [+]
Reference genome	RefGen_v4
Source	SRR1583942
Length	22
Mature sequence(if miRNA)	198 - GUAAGUGCUACAUAUGUCGUGU - 219
Stem-loop(if miRNA)	AAGU  G  -           AU   -  CAGUGGCCGUGUCGGACUAGAUCCGAGGGAUUGACGGGUUAUUCCCAUUUAAGUGUGGUCUAGCCUCUGAGGCGGGACUU     GA AU UGUGGUACUUG  CCU GU                                                                                A     || || |||||||||||  ||| ||                                                                                G     CU UA ACAUCGUGAAU  GGA CG                                                                                G UGUG  G  U           GG   A  UAUACAGUUGAGCGGUGGCCCAAAGAGUUCUGGUCUGGCCCAAUACACCACCUUGACGGGCUUAAUAAGGUUGAAUUCAC
Stem-loop sequence	AAGUGAGAUUGUGGUACUUGAUCCUGUCAGUGGCCGUGUCGGACUAGAUCCGAGGGAUUGACGGGUUAUUCCCAUUUAAGUGUGGUCUAGCCUCUGAGGCGGGACUUAGGCACUUAAGUUGGAAUAAUUCGGGCAGUUCCACCACAUAACCCGGUCUGGUCUUGAGAAACCCGGUGGCGAGUUGACAUAUGCAAGGGGUAAGUGCUACAUAUGUCGUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT083847.2	ncRNA:22   UGUGCUGUAUACAUCGUGAAUG   1   |||||||||||||||||||||* targets:559   ACACGACAUAUGUAGCACUUAA   580 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0046G14 mRNA, complete cds	NA	coding protein	psRNATarget
BT085256.2	ncRNA:22   UGUGCUGUAUACAUCGUGAAUG   1   |||||||||||||||||||||* targets:584   ACACGACAUAUGUAGCACUUAA   605 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0345E14 mRNA, complete cds	NA	coding protein	psRNATarget
BT065436.2	ncRNA:22   UGUGCUGUAUACAUCGUGAAUG   1   |||||||||||||||||||||* targets:628   ACACGACAUAUGUAGCACUUAA   649 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0155E05 mRNA, complete cds	NA	coding protein	psRNATarget
BT085110.2	ncRNA:22   UGUGCUGUAUACAUCGUGAAUG   1   |||||||||||||||||||||* targets:608   ACACGACAUAUGUAGCACUUAA   629 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0291A01 mRNA, complete cds	NA	coding protein	psRNATarget
EZ050138.1	ncRNA:22   UGUGCUGUAUACAUCGUGAAUG   1   |||||||||=|||||||||||* targets:63   ACACGACAUGUGUAGCACUUAA   84 Target Full Sequence	2.5	TSA: Zea mays contig51256, mRNA sequence	NA	coding protein	psRNATarget
EU943317.1	ncRNA:22   UGUGCUGUAUACAUCGUGAAUG   1   |||=|||||||||||||||||* targets:1565   ACAUGACAUAUGUAGCACUUAA   1586 Target Full Sequence	2.0	Zea mays clone 1597341 mRNA sequence	NA	coding protein	psRNATarget