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BaseInfo

ncRNA ID	novel_zma_miR13744
Species	Zea mays
Class	miRNA
Genome position	Chr6:36169949-36170032 [+]
Reference genome	RefGen_v4
Source	SRR1583942
Length	24
Mature sequence(if miRNA)	1 - GUUCUUUGCCGAGUGUUAUGGCAA - 24
Stem-loop(if miRNA)	--                 -AUG   -AA   -UUU  C  GUG   GUUCUUUGCCGAGUGUU    GCA   GAC    GC UA   U   |||||||||||||||||    |||   |||    || ||   CAAGAAAUGGCUCACAG    UGU   CUG    CG AU   A CG                 AUUA   GAG   UUUU  -  AAA
Stem-loop sequence	GUUCUUUGCCGAGUGUUAUGGCAAAGACUUUGCCUAGUGUAAAAUAGCUUUUGUCGAGUGUAUUAGACACUCGGUAAAGAACGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI406962.1	ncRNA:24   AACGGUAUUGUGAGCCGUUUCUUG   1   |*|||||||||||||||||||||= targets:136   UGGCCAUAACACUCGGCAAAGAAU   159 Target Full Sequence	1.0	Sequence 5087 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239092.1	ncRNA:24   AACGGUAUUGUGAGCCGUUUCUUG   1   |*|||||||||||||||||||||= targets:136   UGGCCAUAACACUCGGCAAAGAAU   159 Target Full Sequence	1.0	Sequence 5087 from Patent EP2985353	NA	coding protein	psRNATarget
JB167423.1	ncRNA:24   AACGGUAUUGUGAGCCGUUUCUUG   1   |*|||||||||||||||||||||= targets:136   UGGCCAUAACACUCGGCAAAGAAU   159 Target Full Sequence	1.0	Sequence 5087 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238815.1	ncRNA:22   CGGUAUUGUGAGCCGUUUCUUG   1   |||||||||||||||||||||= targets:1   GCCAUAACACUCGGCAAAGAAU   22 Target Full Sequence	1.0	Sequence 4810 from Patent EP2985353	NA	coding protein	psRNATarget
HI406685.1	ncRNA:22   CGGUAUUGUGAGCCGUUUCUUG   1   |||||||||||||||||||||= targets:1   GCCAUAACACUCGGCAAAGAAU   22 Target Full Sequence	1.0	Sequence 4810 from Patent EP2074227	NA	coding protein	psRNATarget
JB167146.1	ncRNA:22   CGGUAUUGUGAGCCGUUUCUUG   1   |||||||||||||||||||||= targets:1   GCCAUAACACUCGGCAAAGAAU   22 Target Full Sequence	1.0	Sequence 4810 from Patent EP2559767	NA	coding protein	psRNATarget
HI406144.1	ncRNA:24   AACGGUAUUGUGAGCCGUUUCUUG   1   **||||||=||||||||||||||| targets:10   AGGCCAUAGCACUCGGCAAAGAAC   33 Target Full Sequence	1.0	Sequence 4269 from Patent EP2074227	NA	coding protein	psRNATarget
JB166605.1	ncRNA:24   AACGGUAUUGUGAGCCGUUUCUUG   1   **||||||=||||||||||||||| targets:10   AGGCCAUAGCACUCGGCAAAGAAC   33 Target Full Sequence	1.0	Sequence 4269 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238274.1	ncRNA:24   AACGGUAUUGUGAGCCGUUUCUUG   1   **||||||=||||||||||||||| targets:10   AGGCCAUAGCACUCGGCAAAGAAC   33 Target Full Sequence	1.0	Sequence 4269 from Patent EP2985353	NA	coding protein	psRNATarget
JB167589.1	ncRNA:24   AACG---GUAUUGUGAGCCGUUUCUUG   1   *|||---|||==||||||||||||||* targets:31   CUGCUAUCAUGGCACUCGGCAAAGAAG   57 Target Full Sequence	3.0	Sequence 5253 from Patent EP2559767	NA	coding protein	psRNATarget
HI407128.1	ncRNA:24   AACG---GUAUUGUGAGCCGUUUCUUG   1   *|||---|||==||||||||||||||* targets:31   CUGCUAUCAUGGCACUCGGCAAAGAAG   57 Target Full Sequence	3.0	Sequence 5253 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239258.1	ncRNA:24   AACG---GUAUUGUGAGCCGUUUCUUG   1   *|||---|||==||||||||||||||* targets:31   CUGCUAUCAUGGCACUCGGCAAAGAAG   57 Target Full Sequence	3.0	Sequence 5253 from Patent EP2985353	NA	coding protein	psRNATarget
EU972737.1	ncRNA:24   AACG--------GUAUUGUGAGCCGUUUCUUG   1   ||||--------==|||||||||||||||||* targets:1653   UUGCAAACCUAAUGUAACACUCGGCAAAGAAG   1684 Target Full Sequence	2.0	Zea mays clone 386971 mRNA sequence	NA	coding protein	psRNATarget
EU951420.1	ncRNA:24   AACGGUAUUGUGAGCCGUUUCUUG   1   **|===*||||||||||||||||* targets:151   CAGUUGGAACACUCGGCAAAGAAG   174 Target Full Sequence	3.0	Zea mays clone 701735 mRNA sequence	NA	coding protein	psRNATarget