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BaseInfo

ncRNA ID	novel_zma_miR13741
Species	Zea mays
Class	miRNA
Genome position	Chr6:81068163-81068337 [-]
Reference genome	RefGen_v4
Source	SRR1997866
Length	24
Mature sequence(if miRNA)	152 - GCUGUGGGGUCUUCGGCUGCCGGC - 175
Stem-loop(if miRNA)	--       -    --     C     G -    CA     -CUC   C   AC UUCGGGGCGGCUUCGCCCGUCGGCGCAGGGGCUGGU   GCUGUGG GGUC  UUCGG UGCCG C UCGG  GCCGG    GGC ACC  C                                    G   ||||||| ||||  ||||| ||||| | ||||  |||||    ||| |||  |   CGGCACC CCAG  AGGCC ACGGC G AGCC  CGGCC    CCG UGG  C                                    C UC       U    CC     -     G C    UA     ACUU   -   AG CGCUGGGGACGCGGGUGACGCCGGCCGUUUCUGGGG
Stem-loop sequence	GCUGUGGGGUCUUCGGCUGCCGGCUCGGCAGCCGGCUCGGCCACCACCUUCGGGGCGGCUUCGCCCGUCGGCGCAGGGGCUGGUGCGGGGUCUUUGCCGGCCGCAGUGGGCGCAGGGGUCGCCGAGGUGCCUUCACCGGCAUCCGACGGCGGCACCGGACCGACCUCCACGGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020552167.1	ncRNA:24   CGGCCGUCGGCUUCUGGGGUGUCG   1   |||||||||=|||||||||||||| targets:492   GCCGGCAGCUGAAGACCCCACAGC   515 Target Full Sequence	1.0	PREDICTED: Zea mays brain acid soluble protein 1-like (LOC109945811), mRNA	NA	coding protein	psRNATarget
XM_020538104.1	ncRNA:24   CGGCCGUCGGCUUCUGGGGUGUCG   1   ||||||=||||||||||||||||| targets:579   GCCGGCGGCCGAAGACCCCACAGC   602 Target Full Sequence	1.0	PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109939780), mRNA	NA	coding protein	psRNATarget
XM_008668252.1	ncRNA:24   CGGCCGUCGGCUUCUGGGGUGUCG   1   ||||||||||||=||||||||||| targets:680   GCCGGCAGCCGAGGACCCCACAGC   703 Target Full Sequence	1.5	PREDICTED: Zea mays transcriptional regulatory protein AlgP-like (LOC103645137), mRNA	NA	coding protein	psRNATarget
XM_020550871.1	ncRNA:24   CGGCCGUCGGCUUCUGGGGUGUCG   1   ||||||||||||=||||||||||| targets:855   GCCGGCAGCCGAGGACCCCACAGC   878 Target Full Sequence	1.5	PREDICTED: Zea mays actin cytoskeleton-regulatory complex protein PAN1-like (LOC103652134), mRNA	NA	coding protein	psRNATarget
XM_020541295.1	ncRNA:24   CGGCCGUCGGCUUCUGGGGUGUCG   1   ||||||=|||||||||||=||||| targets:750   GCCGGCGGCCGAAGACCCUACAGC   773 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109940918 (LOC109940918), mRNA	NA	coding protein	psRNATarget
XM_008677581.1	ncRNA:24   CGGCCGUCGGCUUCUGGGGUGUCG   1   ||=|||||=||||||||||||||| targets:750   GCUGGCAGUCGAAGACCCCACAGC   773 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103651907 (LOC103651907), mRNA	NA	coding protein	psRNATarget
XM_008681976.1	ncRNA:24   CGGCCGUCGGCUUCUGGGGUGUCG   1   ||||||=|||||=||||||||||| targets:885   GCCGGCGGCCGAGGACCCCACAGC   908 Target Full Sequence	2.5	PREDICTED: Zea mays transcriptional regulatory protein AlgP-like (LOC103655187), mRNA	NA	coding protein	psRNATarget
XM_020544608.1	ncRNA:24   CGGCCGUCGGCUUCUGGGGUGUCG   1   ||||||||||||||||||||||*| targets:753   GCCGGCAGCCGAAGACCCCACAUC   776 Target Full Sequence	1.5	PREDICTED: Zea mays brain acid soluble protein 1-like (LOC109942535), mRNA	NA	coding protein	psRNATarget
XM_020550794.1	ncRNA:24   CGGCCGUCGGCUUCUGGGGUGUCG   1   ||||||*||||||||||||||||| targets:1011   GCCGGCUGCCGAAGACCCCACAGC   1034 Target Full Sequence	1.0	PREDICTED: Zea mays guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas-like (LOC103651991), mRNA	NA	coding protein	psRNATarget
XM_020545377.1	ncRNA:24   CGGCCGUCGGCUUCUGGGGUGUCG   1   |||||||||||||*|||||||||| targets:918   GCCGGCAGCCGAAAACCCCACAGC   941 Target Full Sequence	1.5	PREDICTED: Zea mays actin cytoskeleton-regulatory complex protein PAN1-like (LOC109942829), mRNA	NA	coding protein	psRNATarget
XM_020549035.1	ncRNA:24   CGGCCGUCGGCUUCUGGGGUGUCG   1   |||||||*|=|||||||||||||| targets:810   GCCGGCAUCUGAAGACCCCACAGC   833 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103649024 (LOC103649024), mRNA	NA	coding protein	psRNATarget