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BaseInfo

ncRNA ID	novel_zma_miR13735
Species	Zea mays
Class	miRNA
Genome position	Chr6:138523498-138523607 [-]
Reference genome	RefGen_v4
Source	SRR1997866
Length	23
Mature sequence(if miRNA)	88 - GGUAUGCGGGUGGAGGUGGGGUU - 110
Stem-loop(if miRNA)	--   A      U         -GUUUUACA    G ----A     AACUA       A   GGU UGCGGG GGAGGUGGG         AUGU A     GUCGA     CUACGUU G   ||| |||||| |||||||||         |||| |     |||||     |||||||   UCA GUGUUU CUUCUACCC         UACA U     CAGCU     GGUGUAG G GA   G      -         AAAACGCAG    G AGCAA     ----C       G
Stem-loop sequence	GGUAUGCGGGUGGAGGUGGGGUUUUACAAUGUGAAGUCGAAACUACUACGUUAGGGGAUGUGGCUCGACAACGAUGACAUGACGCAAAACCCAUCUUCUUUGUGGACUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020539436.1	ncRNA:23   UUGGGGUGGAGGUGGGCGUAUGG   1   **|||||*||||||||||*|||| targets:120   UCCCCCAACUCCACCCGCCUACC   142 Target Full Sequence	2.5	PREDICTED: Zea mays cyclic nucleotide-gated ion channel 1 (LOC103629857), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_020539435.1	ncRNA:23   UUGGGGUGGAGGUGGGCGUAUGG   1   **|||||*||||||||||*|||| targets:114   UCCCCCAACUCCACCCGCCUACC   136 Target Full Sequence	2.5	PREDICTED: Zea mays cyclic nucleotide-gated ion channel 1 (LOC103629857), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_020539437.1	ncRNA:23   UUGGGGUGGAGGUGGGCGUAUGG   1   **|||||*||||||||||*|||| targets:168   UCCCCCAACUCCACCCGCCUACC   190 Target Full Sequence	2.5	PREDICTED: Zea mays cyclic nucleotide-gated ion channel 1 (LOC103629857), transcript variant X10, mRNA	NA	coding protein	psRNATarget
XM_020539431.1	ncRNA:23   UUGGGGUGGAGGUGGGCGUAUGG   1   **|||||*||||||||||*|||| targets:115   UCCCCCAACUCCACCCGCCUACC   137 Target Full Sequence	2.5	PREDICTED: Zea mays cyclic nucleotide-gated ion channel 1 (LOC103629857), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020539434.1	ncRNA:23   UUGGGGUGGAGGUGGGCGUAUGG   1   **|||||*||||||||||*|||| targets:114   UCCCCCAACUCCACCCGCCUACC   136 Target Full Sequence	2.5	PREDICTED: Zea mays cyclic nucleotide-gated ion channel 1 (LOC103629857), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539430.1	ncRNA:23   UUGGGGUGGAGGUGGGCGUAUGG   1   **|||||*||||||||||*|||| targets:115   UCCCCCAACUCCACCCGCCUACC   137 Target Full Sequence	2.5	PREDICTED: Zea mays cyclic nucleotide-gated ion channel 1 (LOC103629857), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020539428.1	ncRNA:23   UUGGGGUGGAGGUGGGCGUAUGG   1   **|||||*||||||||||*|||| targets:115   UCCCCCAACUCCACCCGCCUACC   137 Target Full Sequence	2.5	PREDICTED: Zea mays cyclic nucleotide-gated ion channel 1 (LOC103629857), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020539432.1	ncRNA:23   UUGGGGUGGAGGUGGGCGUAUGG   1   **|||||*||||||||||*|||| targets:174   UCCCCCAACUCCACCCGCCUACC   196 Target Full Sequence	2.5	PREDICTED: Zea mays cyclic nucleotide-gated ion channel 1 (LOC103629857), transcript variant X5, mRNA	NA	coding protein	psRNATarget