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BaseInfo

ncRNA ID	novel_zma_miR13713
Species	Zea mays
Class	miRNA
Genome position	Chr5:28810610-28810690 [-]
Reference genome	RefGen_v4
Source	SRR1997866
Length	24
Mature sequence(if miRNA)	58 - AGUAUGUGUAGAAACCUAAGAGGA - 81
Stem-loop(if miRNA)	-- G                     A     CA      CA   A UAUGUGUAGAAACCUAAGAGG CUACA  UGAAAU  U   | ||||||||||||||||||||| |||||  ||||||   U AUACACAUCUUUGGAUUCUCU GGUGU  ACUUUG  A UG G                     A     -A      AG
Stem-loop sequence	AGUAUGUGUAGAAACCUAAGAGGACUACACAUGAAAUCAUAGAGUUUCAAUGUGGAUCUCUUAGGUUUCUACACAUAGUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB170556.1	ncRNA:24   AGGAGAAUCCAAAGAUGUGUAUGA   1   |=||||||||||||||||||||*| targets:66   UUCUCUUAGGUUUCUACACAUAGU   89 Target Full Sequence	1.5	Sequence 8220 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242225.1	ncRNA:24   AGGAGAAUCCAAAGAUGUGUAUGA   1   |=||||||||||||||||||||*| targets:66   UUCUCUUAGGUUUCUACACAUAGU   89 Target Full Sequence	1.5	Sequence 8220 from Patent EP2985353	NA	coding protein	psRNATarget
HI410095.1	ncRNA:24   AGGAGAAUCCAAAGAUGUGUAUGA   1   |=||||||||||||||||||||*| targets:66   UUCUCUUAGGUUUCUACACAUAGU   89 Target Full Sequence	1.5	Sequence 8220 from Patent EP2074227	NA	coding protein	psRNATarget
HI403202.1	ncRNA:24   AGGAGAAUCCAAAGAUGUGUAUGA   1   |=||||||||||||||||||||*| targets:67   UUCUCUUAGGUUUCUACACAUAAU   90 Target Full Sequence	1.5	Sequence 1327 from Patent EP2074227	NA	coding protein	psRNATarget
JB163663.1	ncRNA:24   AGGAGAAUCCAAAGAUGUGUAUGA   1   |=||||||||||||||||||||*| targets:67   UUCUCUUAGGUUUCUACACAUAAU   90 Target Full Sequence	1.5	Sequence 1327 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235332.1	ncRNA:24   AGGAGAAUCCAAAGAUGUGUAUGA   1   |=||||||||||||||||||||*| targets:67   UUCUCUUAGGUUUCUACACAUAAU   90 Target Full Sequence	1.5	Sequence 1327 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235333.1	ncRNA:24   AGGAGAAUCCAAAGAUGUGUAUGA   1   |=||||||||||||||||||||*| targets:69   UUCUCUUAGGUUUCUACACAUAAU   92 Target Full Sequence	1.5	Sequence 1328 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235367.1	ncRNA:24   AGGAGAAUCCAAAGAUGUGUAUGA   1   |=||||||||||||||||||||*| targets:69   UUCUCUUAGGUUUCUACACAUAAU   92 Target Full Sequence	1.5	Sequence 1362 from Patent EP2985353	NA	coding protein	psRNATarget
HI403252.1	ncRNA:24   AGGAGAAUCCAAAGAUGUGUAUGA   1   |=||||||||||||||||||||*| targets:69   UUCUCUUAGGUUUCUACACAUAAU   92 Target Full Sequence	1.5	Sequence 1377 from Patent EP2074227	NA	coding protein	psRNATarget
HI403226.1	ncRNA:24   AGGAGAAUCCAAAGAUGUGUAUGA   1   |=||||||||||||||||||||*| targets:69   UUCUCUUAGGUUUCUACACAUAAU   92 Target Full Sequence	1.5	Sequence 1351 from Patent EP2074227	NA	coding protein	psRNATarget
HI402968.1	ncRNA:24   AGGAGAAUCCAAAGAUGUGUAUGA   1   |=||||||||||||||||||||*| targets:69   UUCUCUUAGGUUUCUACACAUAGU   92 Target Full Sequence	1.5	Sequence 1093 from Patent EP2074227	NA	coding protein	psRNATarget
JB163713.1	ncRNA:24   AGGAGAAUCCAAAGAUGUGUAUGA   1   |=||||||||||||||||||||*| targets:69   UUCUCUUAGGUUUCUACACAUAAU   92 Target Full Sequence	1.5	Sequence 1377 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235380.1	ncRNA:24   AGGAGAAUCCAAAGAUGUGUAUGA   1   |=||||||||||||||||||||*| targets:69   UUCUCUUAGGUUUCUACACAUAAU   92 Target Full Sequence	1.5	Sequence 1375 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235098.1	ncRNA:24   AGGAGAAUCCAAAGAUGUGUAUGA   1   |=||||||||||||||||||||*| targets:69   UUCUCUUAGGUUUCUACACAUAGU   92 Target Full Sequence	1.5	Sequence 1093 from Patent EP2985353	NA	coding protein	psRNATarget
JB163711.1	ncRNA:24   AGGAGAAUCCAAAGAUGUGUAUGA   1   |=||||||||||||||||||||*| targets:69   UUCUCUUAGGUUUCUACACAUAAU   92 Target Full Sequence	1.5	Sequence 1375 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235326.1	ncRNA:24   AGGAGAAUCCAAAGAUGUGUAUGA   1   |=||||||||||||||||||||*| targets:69   UUCUCUUAGGUUUCUACACAUAGU   92 Target Full Sequence	1.5	Sequence 1321 from Patent EP2985353	NA	coding protein	psRNATarget
JB163429.1	ncRNA:24   AGGAGAAUCCAAAGAUGUGUAUGA   1   |=||||||||||||||||||||*| targets:69   UUCUCUUAGGUUUCUACACAUAGU   92 Target Full Sequence	1.5	Sequence 1093 from Patent EP2559767	NA	coding protein	psRNATarget
HI403237.1	ncRNA:24   AGGAGAAUCCAAAGAUGUGUAUGA   1   |=||||||||||||||||||||*| targets:69   UUCUCUUAGGUUUCUACACAUAAU   92 Target Full Sequence	1.5	Sequence 1362 from Patent EP2074227	NA	coding protein	psRNATarget
HI403196.1	ncRNA:24   AGGAGAAUCCAAAGAUGUGUAUGA   1   |=||||||||||||||||||||*| targets:69   UUCUCUUAGGUUUCUACACAUAGU   92 Target Full Sequence	1.5	Sequence 1321 from Patent EP2074227	NA	coding protein	psRNATarget
JB163687.1	ncRNA:24   AGGAGAAUCCAAAGAUGUGUAUGA   1   |=||||||||||||||||||||*| targets:69   UUCUCUUAGGUUUCUACACAUAAU   92 Target Full Sequence	1.5	Sequence 1351 from Patent EP2559767	NA	coding protein	psRNATarget
JB163664.1	ncRNA:24   AGGAGAAUCCAAAGAUGUGUAUGA   1   |=||||||||||||||||||||*| targets:69   UUCUCUUAGGUUUCUACACAUAAU   92 Target Full Sequence	1.5	Sequence 1328 from Patent EP2559767	NA	coding protein	psRNATarget
JB163698.1	ncRNA:24   AGGAGAAUCCAAAGAUGUGUAUGA   1   |=||||||||||||||||||||*| targets:69   UUCUCUUAGGUUUCUACACAUAAU   92 Target Full Sequence	1.5	Sequence 1362 from Patent EP2559767	NA	coding protein	psRNATarget
JB163657.1	ncRNA:24   AGGAGAAUCCAAAGAUGUGUAUGA   1   |=||||||||||||||||||||*| targets:69   UUCUCUUAGGUUUCUACACAUAGU   92 Target Full Sequence	1.5	Sequence 1321 from Patent EP2559767	NA	coding protein	psRNATarget
HI403203.1	ncRNA:24   AGGAGAAUCCAAAGAUGUGUAUGA   1   |=||||||||||||||||||||*| targets:69   UUCUCUUAGGUUUCUACACAUAAU   92 Target Full Sequence	1.5	Sequence 1328 from Patent EP2074227	NA	coding protein	psRNATarget
HI403250.1	ncRNA:24   AGGAGAAUCCAAAGAUGUGUAUGA   1   |=||||||||||||||||||||*| targets:69   UUCUCUUAGGUUUCUACACAUAAU   92 Target Full Sequence	1.5	Sequence 1375 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235356.1	ncRNA:24   AGGAGAAUCCAAAGAUGUGUAUGA   1   |=||||||||||||||||||||*| targets:69   UUCUCUUAGGUUUCUACACAUAAU   92 Target Full Sequence	1.5	Sequence 1351 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235382.1	ncRNA:24   AGGAGAAUCCAAAGAUGUGUAUGA   1   |=||||||||||||||||||||*| targets:69   UUCUCUUAGGUUUCUACACAUAAU   92 Target Full Sequence	1.5	Sequence 1377 from Patent EP2985353	NA	coding protein	psRNATarget
JB163683.1	ncRNA:24   AGGAGAAUCCAAAGAUGUGUAUGA   1   |==|||||||||||||||||||*| targets:137   UUUUCUUAGGUUUCUACACAUAGU   160 Target Full Sequence	1.5	Sequence 1347 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235352.1	ncRNA:24   AGGAGAAUCCAAAGAUGUGUAUGA   1   |==|||||||||||||||||||*| targets:137   UUUUCUUAGGUUUCUACACAUAGU   160 Target Full Sequence	1.5	Sequence 1347 from Patent EP2985353	NA	coding protein	psRNATarget
HI403222.1	ncRNA:24   AGGAGAAUCCAAAGAUGUGUAUGA   1   |==|||||||||||||||||||*| targets:137   UUUUCUUAGGUUUCUACACAUAGU   160 Target Full Sequence	1.5	Sequence 1347 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235350.1	ncRNA:24   AGGAGAAUCCAAAGAUGUGUAUGA   1   |=||||||*|||||||||||||*| targets:137   UUCUCUUAAGUUUCUACACAUAGU   160 Target Full Sequence	2.5	Sequence 1345 from Patent EP2985353	NA	coding protein	psRNATarget
JB163681.1	ncRNA:24   AGGAGAAUCCAAAGAUGUGUAUGA   1   |=||||||*|||||||||||||*| targets:137   UUCUCUUAAGUUUCUACACAUAGU   160 Target Full Sequence	2.5	Sequence 1345 from Patent EP2559767	NA	coding protein	psRNATarget
HI403220.1	ncRNA:24   AGGAGAAUCCAAAGAUGUGUAUGA   1   |=||||||*|||||||||||||*| targets:137   UUCUCUUAAGUUUCUACACAUAGU   160 Target Full Sequence	2.5	Sequence 1345 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235339.1	ncRNA:24   AGGAGAAUCCAAAGAUGUGUAUGA   1   |=|||*||||||||||||||||*| targets:143   UUCUCCUAGGUUUCUACACAUAGU   166 Target Full Sequence	2.5	Sequence 1334 from Patent EP2985353	NA	coding protein	psRNATarget
HI403209.1	ncRNA:24   AGGAGAAUCCAAAGAUGUGUAUGA   1   |=|||*||||||||||||||||*| targets:143   UUCUCCUAGGUUUCUACACAUAGU   166 Target Full Sequence	2.5	Sequence 1334 from Patent EP2074227	NA	coding protein	psRNATarget
JB163670.1	ncRNA:24   AGGAGAAUCCAAAGAUGUGUAUGA   1   |=|||*||||||||||||||||*| targets:143   UUCUCCUAGGUUUCUACACAUAGU   166 Target Full Sequence	2.5	Sequence 1334 from Patent EP2559767	NA	coding protein	psRNATarget