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BaseInfo

ncRNA ID	novel_zma_miR13693
Species	Zea mays
Class	miRNA
Genome position	Chr5:210139457-210139541 [+]
Reference genome	RefGen_v4
Source	SRR1997866
Length	24
Mature sequence(if miRNA)	1 - ACACUAUGUGUAGAAAUCUAGGAG - 24
Stem-loop(if miRNA)	--                   A           CA      CA   ACACUAUGUGUAGAAAUCU GGAGAACUACA  UGAAAU  U   ||||||||||||||||||| |||||||||||  ||||||   UGUGAUACACAUCUUUGGA CCUCUUGAUGU  ACUUUG  A CC                   C           -A      AG
Stem-loop sequence	ACACUAUGUGUAGAAAUCUAGGAGAACUACACAUGAAAUCAUAGAGUUUCAAUGUAGUUCUCCCAGGUUUCUACACAUAGUGUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI402968.1	ncRNA:24   GAGGAUCUAAAGAUGUGUAUCACA   1   |||=|||=|||||||||||||||| targets:71   CUCUUAGGUUUCUACACAUAGUGU   94 Target Full Sequence	1.0	Sequence 1093 from Patent EP2074227	NA	coding protein	psRNATarget
JB163657.1	ncRNA:24   GAGGAUCUAAAGAUGUGUAUCACA   1   |||=|||=|||||||||||||||| targets:71   CUCUUAGGUUUCUACACAUAGUGU   94 Target Full Sequence	1.0	Sequence 1321 from Patent EP2559767	NA	coding protein	psRNATarget
HI403196.1	ncRNA:24   GAGGAUCUAAAGAUGUGUAUCACA   1   |||=|||=|||||||||||||||| targets:71   CUCUUAGGUUUCUACACAUAGUGU   94 Target Full Sequence	1.0	Sequence 1321 from Patent EP2074227	NA	coding protein	psRNATarget
JB163429.1	ncRNA:24   GAGGAUCUAAAGAUGUGUAUCACA   1   |||=|||=|||||||||||||||| targets:71   CUCUUAGGUUUCUACACAUAGUGU   94 Target Full Sequence	1.0	Sequence 1093 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235098.1	ncRNA:24   GAGGAUCUAAAGAUGUGUAUCACA   1   |||=|||=|||||||||||||||| targets:71   CUCUUAGGUUUCUACACAUAGUGU   94 Target Full Sequence	1.0	Sequence 1093 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235326.1	ncRNA:24   GAGGAUCUAAAGAUGUGUAUCACA   1   |||=|||=|||||||||||||||| targets:71   CUCUUAGGUUUCUACACAUAGUGU   94 Target Full Sequence	1.0	Sequence 1321 from Patent EP2985353	NA	coding protein	psRNATarget
LQ242225.1	ncRNA:24   GAGGAUCUAAAGAUGUGUAUCACA   1   |||=|||=|||||||||||||||| targets:68   CUCUUAGGUUUCUACACAUAGUGU   91 Target Full Sequence	1.0	Sequence 8220 from Patent EP2985353	NA	coding protein	psRNATarget
JB170556.1	ncRNA:24   GAGGAUCUAAAGAUGUGUAUCACA   1   |||=|||=|||||||||||||||| targets:68   CUCUUAGGUUUCUACACAUAGUGU   91 Target Full Sequence	1.0	Sequence 8220 from Patent EP2559767	NA	coding protein	psRNATarget
HI410095.1	ncRNA:24   GAGGAUCUAAAGAUGUGUAUCACA   1   |||=|||=|||||||||||||||| targets:68   CUCUUAGGUUUCUACACAUAGUGU   91 Target Full Sequence	1.0	Sequence 8220 from Patent EP2074227	NA	coding protein	psRNATarget
HI403222.1	ncRNA:24   GAGGAUCUAAAGAUGUGUAUCACA   1   =||=|||=|||||||||||||||| targets:139   UUCUUAGGUUUCUACACAUAGUGU   162 Target Full Sequence	1.0	Sequence 1347 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235352.1	ncRNA:24   GAGGAUCUAAAGAUGUGUAUCACA   1   =||=|||=|||||||||||||||| targets:139   UUCUUAGGUUUCUACACAUAGUGU   162 Target Full Sequence	1.0	Sequence 1347 from Patent EP2985353	NA	coding protein	psRNATarget
JB163683.1	ncRNA:24   GAGGAUCUAAAGAUGUGUAUCACA   1   =||=|||=|||||||||||||||| targets:139   UUCUUAGGUUUCUACACAUAGUGU   162 Target Full Sequence	1.0	Sequence 1347 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235350.1	ncRNA:24   GAGGAUCUAAAGAUGUGUAUCACA   1   |||=||*=|||||||||||||||| targets:139   CUCUUAAGUUUCUACACAUAGUGU   162 Target Full Sequence	2.0	Sequence 1345 from Patent EP2985353	NA	coding protein	psRNATarget
JB163681.1	ncRNA:24   GAGGAUCUAAAGAUGUGUAUCACA   1   |||=||*=|||||||||||||||| targets:139   CUCUUAAGUUUCUACACAUAGUGU   162 Target Full Sequence	2.0	Sequence 1345 from Patent EP2559767	NA	coding protein	psRNATarget
HI403220.1	ncRNA:24   GAGGAUCUAAAGAUGUGUAUCACA   1   |||=||*=|||||||||||||||| targets:139   CUCUUAAGUUUCUACACAUAGUGU   162 Target Full Sequence	2.0	Sequence 1345 from Patent EP2074227	NA	coding protein	psRNATarget
JB163664.1	ncRNA:24   GAGGAUCUAAAGAUGUGUAUCACA   1   |||=|||=||||||||||||*||| targets:71   CUCUUAGGUUUCUACACAUAAUGU   94 Target Full Sequence	2.5	Sequence 1328 from Patent EP2559767	NA	coding protein	psRNATarget
HI403203.1	ncRNA:24   GAGGAUCUAAAGAUGUGUAUCACA   1   |||=|||=||||||||||||*||| targets:71   CUCUUAGGUUUCUACACAUAAUGU   94 Target Full Sequence	2.5	Sequence 1328 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235382.1	ncRNA:24   GAGGAUCUAAAGAUGUGUAUCACA   1   |||=|||=||||||||||||*||| targets:71   CUCUUAGGUUUCUACACAUAAUGU   94 Target Full Sequence	2.5	Sequence 1377 from Patent EP2985353	NA	coding protein	psRNATarget
HI403252.1	ncRNA:24   GAGGAUCUAAAGAUGUGUAUCACA   1   |||=|||=||||||||||||*||| targets:71   CUCUUAGGUUUCUACACAUAAUGU   94 Target Full Sequence	2.5	Sequence 1377 from Patent EP2074227	NA	coding protein	psRNATarget
JB163687.1	ncRNA:24   GAGGAUCUAAAGAUGUGUAUCACA   1   |||=|||=||||||||||||*||| targets:71   CUCUUAGGUUUCUACACAUAAUGU   94 Target Full Sequence	2.5	Sequence 1351 from Patent EP2559767	NA	coding protein	psRNATarget
HI403250.1	ncRNA:24   GAGGAUCUAAAGAUGUGUAUCACA   1   |||=|||=||||||||||||*||| targets:71   CUCUUAGGUUUCUACACAUAAUGU   94 Target Full Sequence	2.5	Sequence 1375 from Patent EP2074227	NA	coding protein	psRNATarget
HI403237.1	ncRNA:24   GAGGAUCUAAAGAUGUGUAUCACA   1   |||=|||=||||||||||||*||| targets:71   CUCUUAGGUUUCUACACAUAAUGU   94 Target Full Sequence	2.5	Sequence 1362 from Patent EP2074227	NA	coding protein	psRNATarget
JB163713.1	ncRNA:24   GAGGAUCUAAAGAUGUGUAUCACA   1   |||=|||=||||||||||||*||| targets:71   CUCUUAGGUUUCUACACAUAAUGU   94 Target Full Sequence	2.5	Sequence 1377 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235367.1	ncRNA:24   GAGGAUCUAAAGAUGUGUAUCACA   1   |||=|||=||||||||||||*||| targets:71   CUCUUAGGUUUCUACACAUAAUGU   94 Target Full Sequence	2.5	Sequence 1362 from Patent EP2985353	NA	coding protein	psRNATarget
JB163711.1	ncRNA:24   GAGGAUCUAAAGAUGUGUAUCACA   1   |||=|||=||||||||||||*||| targets:71   CUCUUAGGUUUCUACACAUAAUGU   94 Target Full Sequence	2.5	Sequence 1375 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235356.1	ncRNA:24   GAGGAUCUAAAGAUGUGUAUCACA   1   |||=|||=||||||||||||*||| targets:71   CUCUUAGGUUUCUACACAUAAUGU   94 Target Full Sequence	2.5	Sequence 1351 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235333.1	ncRNA:24   GAGGAUCUAAAGAUGUGUAUCACA   1   |||=|||=||||||||||||*||| targets:71   CUCUUAGGUUUCUACACAUAAUGU   94 Target Full Sequence	2.5	Sequence 1328 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235380.1	ncRNA:24   GAGGAUCUAAAGAUGUGUAUCACA   1   |||=|||=||||||||||||*||| targets:71   CUCUUAGGUUUCUACACAUAAUGU   94 Target Full Sequence	2.5	Sequence 1375 from Patent EP2985353	NA	coding protein	psRNATarget
JB163698.1	ncRNA:24   GAGGAUCUAAAGAUGUGUAUCACA   1   |||=|||=||||||||||||*||| targets:71   CUCUUAGGUUUCUACACAUAAUGU   94 Target Full Sequence	2.5	Sequence 1362 from Patent EP2559767	NA	coding protein	psRNATarget
HI403226.1	ncRNA:24   GAGGAUCUAAAGAUGUGUAUCACA   1   |||=|||=||||||||||||*||| targets:71   CUCUUAGGUUUCUACACAUAAUGU   94 Target Full Sequence	2.5	Sequence 1351 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235332.1	ncRNA:24   GAGGAUCUAAAGAUGUGUAUCACA   1   |||=|||=||||||||||||*||| targets:69   CUCUUAGGUUUCUACACAUAAUGU   92 Target Full Sequence	2.5	Sequence 1327 from Patent EP2985353	NA	coding protein	psRNATarget
JB163663.1	ncRNA:24   GAGGAUCUAAAGAUGUGUAUCACA   1   |||=|||=||||||||||||*||| targets:69   CUCUUAGGUUUCUACACAUAAUGU   92 Target Full Sequence	2.5	Sequence 1327 from Patent EP2559767	NA	coding protein	psRNATarget
HI403202.1	ncRNA:24   GAGGAUCUAAAGAUGUGUAUCACA   1   |||=|||=||||||||||||*||| targets:69   CUCUUAGGUUUCUACACAUAAUGU   92 Target Full Sequence	2.5	Sequence 1327 from Patent EP2074227	NA	coding protein	psRNATarget