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BaseInfo

ncRNA ID	novel_zma_miR13688
Species	Zea mays
Class	miRNA
Genome position	Chr10:9156729-9156949 [-]
Reference genome	RefGen_v4
Source	SRR1997866
Length	24
Mature sequence(if miRNA)	198 - UAAUAGACUACGUUUAGAGACACU - 221
Stem-loop(if miRNA)	--                G                                      C                           C               -A    A AA   UAAUAGACUACGUUUA AGACACUCCAUUGUACAAUAGAGUCUCUUAGUUGUCUC UGUGCUUGGAGAACCGUUUUGGUGUCU UCCACUGUACAUGCC  AGUA C  C   |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||  |||| |   AUUAUCUGAUGCAAAU UCUGUGAGGUAACAUGUUAUCUCAGAGAAUCAACAGAG ACACGAACCUCUUGGCAAAACCACAGA AGGUGACAUGUACGG  UUAU G  A UA                A                                      A                           A               GA    C CU
Stem-loop sequence	UAAUAGACUACGUUUAGAGACACUCCAUUGUACAAUAGAGUCUCUUAGUUGUCUCCUGUGCUUGGAGAACCGUUUUGGUGUCUCUCCACUGUACAUGCCAAGUAACAACAUCGCUAUUAGGGCAUGUACAGUGGAAAGACACCAAAACGGUUCUCCAAGCACAAGAGACAACUAAGAGACUCUAUUGUACAAUGGAGUGUCUAUAAACGUAGUCUAUUAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020546921.1	ncRNA:24   UCACAGAGAUUUGCAUCAGAUAAU   1   |||||||*|||||||||||||||| targets:2226   AGUGUCUAUAAACGUAGUCUAUUA   2249 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC109943544 (LOC109943544), mRNA	NA	coding protein	psRNATarget
EU971588.1	ncRNA:24   UCACAGAGAUUUGCAUCAGAUAAU   1   |||||||*|||||||||||||||| targets:1491   AGUGUCUAUAAACGUAGUCUAUUA   1514 Target Full Sequence	1.0	Zea mays clone 367657 nicotianamine synthase 3 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020551598.1	ncRNA:24   UCACAGAGAUUUGCAUCAGAUAAU   1   |||||||*|||||||||||||||| targets:8   AGUGUCUAUAAACGUAGUCUAUUA   31 Target Full Sequence	1.0	PREDICTED: Zea mays calmodulin-related protein (LOC100285551), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU941079.1	ncRNA:24   UCACAGAGAUUUGCAUCAGAUAAU   1   |||||||*|||||||||||||||| targets:869   AGUGUCUAUAAACGUAGUCUAUUA   892 Target Full Sequence	1.0	Zea mays clone 1285899 mRNA sequence	NA	coding protein	psRNATarget
NM_001153068.1	ncRNA:24   UCACAGAGAUUUGCAUCAGAUAAU   1   |||||||*|||||||||||||||| targets:753   AGUGUCUAUAAACGUAGUCUAUUA   776 Target Full Sequence	1.0	Zea mays uncharacterized LOC100280135 (LOC100280135), mRNA	NA	coding protein	psRNATarget
BT055639.1	ncRNA:24   UCACAGAGAUUUGCAUCAGAUAAU   1   |||||||*|||||||||||||||| targets:753   AGUGUCUAUAAACGUAGUCUAUUA   776 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0090K01 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008683311.2	ncRNA:24   UCACAGAGAUUUGCAUCAGAUAAU   1   |||||||*||||||||||=||||| targets:3312   AGUGUCUAUAAACGUAGUUUAUUA   3335 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100304433), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020537577.1	ncRNA:24   UCACAGAGAUUUGCAUCAGAUAAU   1   |||||||*||||||||||=||||| targets:3248   AGUGUCUAUAAACGUAGUUUAUUA   3271 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100304433), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008683325.2	ncRNA:24   UCACAGAGAUUUGCAUCAGAUAAU   1   |||||||*||||||||||=||||| targets:3161   AGUGUCUAUAAACGUAGUUUAUUA   3184 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100304433), transcript variant X5, mRNA	NA	coding protein	psRNATarget