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BaseInfo

ncRNA ID	novel_zma_miR13660
Species	Zea mays
Class	miRNA
Genome position	Chr4:183710044-183710219 [-]
Reference genome	RefGen_v4
Source	SRR1997866
Length	24
Mature sequence(if miRNA)	1 - AGAGGAUUUGAGUUUUCAAACUAG - 24
Stem-loop(if miRNA)	--   C  GG           A     CA          --    GG  --GAA    -A       -----    G UU    UGAG      G   AGU UG  AACUCAAAUCC CUUGA  AUUAGAGGGA  UUGG  UG     ACUC  AAUUUCU     UGGC A  GGAG    UUGGGU A   ||| ||  ||||||||||| |||||  ||||||||||  ||||  ||     ||||  |||||||     |||| |  ||||    ||||||   UCA AC  UUGAGUUUAGG GAACU  UAAUCUCUCU  AAUC  GU     UGGG  UUAAAGG     ACCG U  UCUC    AACUCA A GA   A  UU           A     -C          UU    AA  AAAGG    GG       AAUGU    G -U    --UA      A
Stem-loop sequence	AGUCUGGGAACUCAAAUCCACUUGACAAUUAGAGGGAUUGGGGUGGAAACUCAAAUUUCUUGGCGAUUGGAGUGAGUUGGGUGAAAACUCAAAUCUCUUUGGCCAUGUAAGGAAAUUGGGGGUGGAAAUGAACUAAUUUCUCUCUAAUCUCAAGAGGAUUUGAGUUUUCAAACUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU940753.1	ncRNA:24   GAUCAAACUUUUGAGUUUAGGAGA   1   ||||||||=||||||||||=|||| targets:1260   CUAGUUUGGAAACUCAAAUUCUCU   1283 Target Full Sequence	2.5	Zea mays clone 1061976 mRNA sequence	NA	coding protein	psRNATarget
XM_008666766.2	ncRNA:24   GAUCAAACUUUUGAGUUUAGGAGA   1   ||||||||=||||||||||||*|| targets:5278   CUAGUUUGGAAACUCAAAUCCCCU   5301 Target Full Sequence	2.5	PREDICTED: Zea mays protein TIFY 11d (LOC103643602), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546797.1	ncRNA:24   GAUCAAACUUUUGAGUUUAGGAGA   1   ||||||||=||||||||||||*|| targets:5144   CUAGUUUGGAAACUCAAAUCCCCU   5167 Target Full Sequence	2.5	PREDICTED: Zea mays protein TIFY 11d (LOC103643602), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008658575.2	ncRNA:24   GAUCAAACUUUUGAGUUUAGGAGA   1   ||||||||=||||||||||*|||| targets:1096   CUAGUUUGGAAACUCAAAUGCUCU   1119 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized protein, chloroplastic-like (LOC103636217), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001347002.1	ncRNA:24   GAUCAAACUUUUGAGUUUAGGAGA   1   ||||||||=||||||||||*|||| targets:1084   CUAGUUUGGAAACUCAAAUGCUCU   1107 Target Full Sequence	2.5	Zea mays uncharacterized protein, chloroplastic-like (LOC103636217), mRNA	NA	coding protein	psRNATarget
XM_020539803.1	ncRNA:24   GAUCAAACUUUUGAGUUUAGGAGA   1   ||||||||=||||||||||*|||| targets:774   CUAGUUUGGAAACUCAAAUGCUCU   797 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized protein, chloroplastic-like (LOC103636217), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT084379.2	ncRNA:24   GAUCAAACUUUUGAGUUUAGGAGA   1   ||||||||=||||||||||||*|| targets:201   CUAGUUUGGAAACUCAAAUCCCCU   224 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0107D05 mRNA, complete cds	NA	coding protein	psRNATarget
EU941872.1	ncRNA:24   GAUCAAACUUUUGAGUUUAGGAGA   1   ||||||||=||||||||||||*|| targets:33   CUAGUUUGGAAACUCAAAUCCCCU   56 Target Full Sequence	2.5	Zea mays clone 1471472 mRNA sequence	NA	coding protein	psRNATarget
EU955577.1	ncRNA:24   GAUCAAACUUUUGAGUUUAGGAGA   1   |||||||||||||||||||||*|* targets:2079   CUAGUUUGAAAACUCAAAUCCCCA   2102 Target Full Sequence	2.5	Zea mays clone 1537616 kelch motif family protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154017.2	ncRNA:24   GAUCAAACUUUUGAGUUUAGGAGA   1   |||||||||||||||||||||*|* targets:2078   CUAGUUUGAAAACUCAAAUCCCCA   2101 Target Full Sequence	2.5	Zea mays kelch motif family protein (LOC100281098), mRNA	NA	coding protein	psRNATarget